BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900106
Length=213
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28664.1 | Symbols: | transposable element gene | chr5:1068... 278 2e-74
> AT5G28664.1 | Symbols: | transposable element gene | chr5:10687264-10688628
REVERSE LENGTH=1365
Length=1365
Score = 278 bits (150), Expect = 2e-74
Identities = 192/213 (90%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 1 ATGGCTACAGTGGGATTACATAATTTCATCAGAATTTCAAATTTCTCAGATGCAGATTTC 60
||||||||| || ||||||||||||| || |||| ||||||||| | ||| |||||||
Sbjct 1096 ATGGCTACAATGAGATTACATAATTTTATGAGAAGTTCAAATTTTTTGGATTCAGATTTT 1155
Query 61 GCAGATGTAATGACAGAAACAAATATAAACAACGGAGATTTTGAGCATGATGTAGGTGAC 120
| ||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 1156 GTAGATGTAATGACAGAAACAAATATAAACAACCGAGATTTTGAGCATGATGTAAGCGAC 1215
Query 121 ATGGATGCAGCAGAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATATTGCA 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1216 ATGGATGCAGCATAGTTAGCAGATGGAGAACATATGACGCAAATAAGAGACAATATTGAA 1275
Query 181 AATATGTTATGGGAAAATCAAAATAATAGATAA 213
||||| |||||| ||||||||| || | |||||
Sbjct 1276 AATATTTTATGGAAAAATCAAAGTAGTCGATAA 1308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500604561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5