BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900120
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26130.1 | Symbols: | RING/U-box protein with C6HC-type zin... 1142 0.0
AT2G26135.1 | Symbols: | RING/U-box protein with C6HC-type zin... 510 8e-144
> AT2G26130.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr2:11127134-11128476 FORWARD LENGTH=1197
Length=1197
Score = 1142 bits (618), Expect = 0.0
Identities = 831/931 (89%), Gaps = 26/931 (3%)
Strand=Plus/Plus
Query 1 ATGGGGAGATTCACTCCTGAGCAAGAAAACATTGCCTTGCTAATTCGTGATGTGCAAGGC 60
||||| | || ||||||| ||||||||| ||||||||||||| | |||||||||||||||
Sbjct 286 ATGGGAATATCCACTCCTAAGCAAGAAAGCATTGCCTTGCTACTGCGTGATGTGCAAGGC 345
Query 61 ATCAGAAACA-ATTTGACGTCTAGCATCCCTGTTATGTTGACTCTAAGTCAATCTAATTT 119
|||||||| | ||||||| ||||||||||||||||||||||||| || ||| ||||||||
Sbjct 346 ATCAGAAA-ATATTTGACTTCTAGCATCCCTGTTATGTTGACTCAAAATCAGTCTAATTT 404
Query 120 TGCCTACGAACTTGCAATTGAAGCAATCTCTTCTGATATCATCATAGATATTCCTCCTCA 179
|||||||| |||| || ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 405 AGCCTACGATTTTGCGATAGAAGCAATCTCTTCTGAGATCATCATAGATATTCCTGCTCA 464
Query 180 GAAAGAGACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTCGGT 239
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 465 GAAAGAAACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTCCGT 524
Query 240 TGATAATTGTGGTCATATGTTTTGTTCCGAATGCGTTAAACGACATATAGAGGTGAAACT 299
|||||| |||||||||||| |||||| ||||| || ||||||||||||||||||| |||
Sbjct 525 TGATAAAAGTGGTCATATGTGTTGTTCTGAATGTGTGAAACGACATATAGAGGTGAGACT 584
Query 300 ACTAGAGGGAAGTTTGATCAGC-TGTCCTCATTATCTTTGCAGTTCTCTGCTGAGTTCTG 358
||| || ||||||||||| | | ||||||||||||| ||||| ||||||||||| |||||
Sbjct 585 ACTTGAAGGAAGTTTGAT-AACATGTCCTCATTATCGTTGCAATTCTCTGCTGACTTCTG 643
Query 359 AATT--TTGTGTCAACATTTTGACTCCTAAACTAAA-AGAGATGTGGGAGAAAAAGACTA 415
|| ||||| |||| |||| || ||||||||||| | ||||||||||| |||||||||
Sbjct 644 --TTCGTTGTGGCAACCTTTTAACACCTAAACTAAATA-AGATGTGGGAGCAAAAGACTA 700
Query 416 AAGAGGACTTGATTCCTGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACTT 475
|||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 701 AAGATGAGTTGATTCCTGTAATGGATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACTT 760
Query 476 TAATGTCGGAAACCGAGCTCTCTGGACTTATTATTGGAGTTAGGATATGCTGTGTAAAAT 535
|||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 761 TAATGTCGGAAACCGAGCTCTCTGGACTTAACATTGGAGTGAGGAGATGCTGTGTAAAAT 820
Query 536 GTGGCGAACCCTTTTGCATCAACTGCAAAGTACCGTGGCATAATAACTTTTCGTGCGAGG 595
||||||||||||||||| |||| |||||||| |||||||||||||||| |||||||| |
Sbjct 821 GTGGCGAACCCTTTTGCGTCAAGTGCAAAGTTTCGTGGCATAATAACTTGTCGTGCGACG 880
Query 596 AGTACAAGA-GATTGCATCCAAATGCTACAGAAAACGATGGAAAGCTAAAAGATCTAGCG 654
||||||||| | || ||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 881 AGTACAAGACG-TTACATCCAAATCCTACAGAAAACGATGGAAGGCTAAGAGATCTAGCG 939
Query 655 AATGAGAAATTGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 714
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 999
Query 715 TGCGTCAGTGTAATTTGCAGATGTGGACATGA-GTTTTGCTACCGATGTGGAGCCGATGC 773
||| |||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||
Sbjct 1000 TGCATCAGTGTAGTTTGCAGATGTGGACAT-ACGTTTTGCTACCAATGTGGAGCCGATGC 1058
Query 774 TGGAGATTGCTCTCATGGTCATGGCTTACCTCTTACAGATGATCTGCTTTTGACACCATG 833
||||||||||| |||||||| |||| | | ||||||||| |||||||| |||
Sbjct 1059 TGGAGATTGCTTTCATGGTCTTGGC--AG-----A--GATGATCTGGATTTGACACAATG 1109
Query 834 CTGTGCTTTTTGCTGCTGTTCTGTTTTCTTTTTGGTGATAATTGCTATTGTTGTTGTTAC 893
|||| || |||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 1110 TTGTGGTTCGTGCTGCTGTTTTGTTTTCTTTTTGGTGATAATTGCTATTGT-G--GTTAC 1166
Query 894 TATAATATTCCTCATAAGACGGTTCTCGTAA 924
||| ||||| ||| |||||||||||||||||
Sbjct 1167 TATTATATTACTCGTAAGACGGTTCTCGTAA 1197
> AT2G26135.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr2:11130119-11131514 FORWARD LENGTH=1155
Length=1155
Score = 510 bits (276), Expect = 8e-144
Identities = 524/637 (82%), Gaps = 43/637 (7%)
Strand=Plus/Plus
Query 180 GAAAGAGACTTGCAATATATGTTT-GAACGATGACATCAATGCTGATCA-GATGTTTTCG 237
|||| ||||||||| ||| ||||| | |||||||||||||||||||| | ||||||||
Sbjct 447 GAAAAAGACTTGCACTATCTGTTTCG-ACGATGACATCAATGCTGAT-ATGATGTTTTAT 504
Query 238 GTTGAT-AATTGTGGTCATATGTTTTGTTCCGAATGCGTTAAACGACATATAGAGGTGAA 296
||||| || |||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 505 ATTGATCAA-TGTGGTCATATGTTTTGTTCCGAATGTGTGAAACGACATATTGAGGTGAG 563
Query 297 ACTACTAGAGGGAAGTTTGATCAGC-TGTCCTCA-TTATCTTTGCAGTTCTCTGCTGAGT 354
||||| ||||||||||||| | | |||||| | |||| |||| ||| ||||| |
Sbjct 564 TCTACTTCAGGGAAGTTTGAT-AACATGTCCT-AGTTATAGGTGCAAATCTAAGCTGACT 621
Query 355 TCT-GAATTTTGTGTCAACATTTTGACTCCTAAACTAAAAGAGATGTGGGAGA-AAAAGA 412
| | ||| |||||| || |||||||| |||||| |||||||||||| ||| | ||| ||
Sbjct 622 TATGGAA-GTTGTGTTAATATTTTGACACCTAAAGTAAAAGAGATGT-GGATACAAAGGA 679
Query 413 CT-AAAGAGGACTT-GATTCCTGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTC 470
| |||||| || ||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 680 -TGGGAGAGGA-TTCGATTCCTGTAACGGATAGAGTTTATTGCCCAAACCCGACGTGCTC 737
Query 471 GA-CTTTAATGTCGGAAACCGAGCTCTCTGGACTTATTATTGG-AGTTAGGATATGCTGT 528
| |||||||||| | |||||||||| | ||| | | || || || || |||||||
Sbjct 738 -AGCTTTAATGTCAGTAACCGAGCTCGATCAACTCA-CA--GGAAG-TAAGAGATGCTGT 792
Query 529 GTAAAATGTGGCGAACCCTTTTGCATCAACTGCAAAGTACCGTGGCATAATAACTTTTCG 588
|| ||||| || ||| ||||||||||||| |||||||| ||||||||| ||||||| |||
Sbjct 793 GTCAAATGCGGTGAATCCTTTTGCATCAAGTGCAAAGTTCCGTGGCATGATAACTTGTCG 852
Query 589 TGCGAGGA-G-TAC-AAGAGATTGCATCCAAATGC-TACAGA-AAACGATGGAA-AGCTA 642
||| | | | ||| || || |||||| ||||| | |||| | ||||||| || ||||
Sbjct 853 TGC-A-AACGTTACAAAAAG-TTGCATTCAAAT-CGTACA-ACAAACGAT-AAACAGCTT 906
Query 643 AAAGATCTAGCGAATGA-GAAATTGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGA 701
|| || ||||| ||| | |||| | |||||||||||||||||||||||||| ||||||||
Sbjct 907 AACGAACTAGCAAATCAGGAAAGT-TGGCGTCAATGCAGCAAGTGTAAACATATGATTGA 965
Query 702 ACTTTCTTC-TGGATGCGTCAGTGTAATTTGCAGATGTGGACATGAGTTTTGCTACCGAT 760
|||| | || ||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct 966 ACTTAC-TCAAGGATGCGTCCGCGTAATTTGCAGATGTGGACATGAGTTTTGCTATGGAT 1024
Query 761 GTGGAGCCGATGCTGGA-GATTGCTCTCATGGTCATG 796
||||||| ||||||||| | |||||||||||||||||
Sbjct 1025 GTGGAGCTGATGCTGGATG-TTGCTCTCATGGTCATG 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5