BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900122
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26130.1 | Symbols: | RING/U-box protein with C6HC-type zin... 970 0.0
> AT2G26130.1 | Symbols: | RING/U-box protein with C6HC-type zinc
finger | chr2:11127134-11128476 FORWARD LENGTH=1197
Length=1197
Score = 970 bits (525), Expect = 0.0
Identities = 668/738 (91%), Gaps = 6/738 (1%)
Strand=Plus/Plus
Query 22 GTCACGGGGAGATCCACGCC-AGAGCAAGAAAACATTGCCTTGCTAATGCTTGATGTGCA 80
|||| ||| | |||||| || | ||||||||| ||||||||||||| ||| |||||||||
Sbjct 283 GTCATGGGAATATCCACTCCTA-AGCAAGAAAGCATTGCCTTGCTACTGCGTGATGTGCA 341
Query 81 AGGCATCAGAAAATCTTTGACATCTAGCATCCCTGTTCTGTTGACTCGAGACCAATCAAA 140
|||||||||||||| |||||| ||||||||||||||| ||||||||| | | || || ||
Sbjct 342 AGGCATCAGAAAATATTTGACTTCTAGCATCCCTGTTATGTTGACTCAAAATCAGTCTAA 401
Query 141 TTTTGCCTACGACTTTGCAATAGAAGCAATCTCTTCTGATATCATCATAGATATTCCTTC 200
||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
Sbjct 402 TTTAGCCTACGATTTTGCGATAGAAGCAATCTCTTCTGAGATCATCATAGATATTCCTGC 461
Query 201 TCAGAAAGAGACTTGCAATATCTGTTTGAACGATGACATCAATGCTGATCAGATGTTTTC 260
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 462 TCAGAAAGAAACTTGCAATATATGTTTGAACGATGACATCAATGCTGATCAGATGTTTTC 521
Query 261 TGTTGATAAATGTGGTCATATGTTTTGTTCTGAATGCGTTAAACGACATATAGAGGTGAG 320
||||||||| |||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 522 CGTTGATAAAAGTGGTCATATGTGTTGTTCTGAATGTGTGAAACGACATATAGAGGTGAG 581
Query 321 ACTACTAGAGGGAAGTTTGATAAGATGTCCTGATTATCGTTGC-ATATCTCTGCTGACTT 379
|||||| || ||||||||||||| ||||||| ||||||||||| || |||||||||||||
Sbjct 582 ACTACTTGAAGGAAGTTTGATAACATGTCCTCATTATCGTTGCAAT-TCTCTGCTGACTT 640
Query 380 ATGGAAGTTGTGTCAACCTTTTGACACCTAAACTAAA-AGAGATGTGGGAACAAAAGACT 438
|| |||||| ||||||||| |||||||||||||| | |||||||||| |||||||||
Sbjct 641 CTGTTCGTTGTGGCAACCTTTTAACACCTAAACTAAATA-AGATGTGGGAGCAAAAGACT 699
Query 439 AAAGAAGACTCCATCCCGGTAACGAATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACT 498
||||| || | || || |||| | |||||||||||||||||||||||||||||||||||
Sbjct 700 AAAGATGAGTTGATTCCTGTAATGGATAGAGTTTATTGCCCAAACCCGAGGTGCTCGACT 759
Query 499 TTAATGTCGGAAACCGAGCTCTCTGAACTTATCATTGGATTTAGGAGATGCTGTGTAAAA 558
||||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||
Sbjct 760 TTAATGTCGGAAACCGAGCTCTCTGGACTTAACATTGGAGTGAGGAGATGCTGTGTAAAA 819
Query 559 TGCGGCGAACCCTTTTGCACCAAGTGCAAAGTACCGTGGCATAATAACTTGTTGTGCGAC 618
|| ||||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct 820 TGTGGCGAACCCTTTTGCGTCAAGTGCAAAGTTTCGTGGCATAATAACTTGTCGTGCGAC 879
Query 619 CAGTACAAGAGGTTACATCCAAATCCTACAGAAAACGATGGAAAGCTAAAAGGTCTAGCG 678
||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 880 GAGTACAAGACGTTACATCCAAATCCTACAGAAAACGATGGAAGGCTAAGAGATCTAGCG 939
Query 679 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACGTTCTTCTGGA 738
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 940 AATGAGAAATCGTGGCGTCAATGCAGCAAGTGTAAACACATGATTGAACTTTCTTCTGGA 999
Query 739 TGCCTCAGTGTAATTTGC 756
||| |||||||| |||||
Sbjct 1000 TGCATCAGTGTAGTTTGC 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5