BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900123

Length=555
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26135.1 | Symbols:  | RING/U-box protein with C6HC-type zin...   401    3e-111


> AT2G26135.1 | Symbols:  | RING/U-box protein with C6HC-type zinc 
finger | chr2:11130119-11131514 FORWARD LENGTH=1155
Length=1155

 Score =  401 bits (217),  Expect = 3e-111
 Identities = 319/366 (87%), Gaps = 16/366 (4%)
 Strand=Plus/Plus

Query  198  GATAGATGTGCCTGCGCTGTTTCATCCGAAAATGACTTGCAGTATTTGTTTCGACGATGA  257
            ||||||||||||||| |||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct  420  GATAGATGTGCCTGCTCTGTTTCATCCGAAAAAGACTTGCACTATCTGTTTCGACGATGA  479

Query  258  CATCAATGCGGATCA-GATGTTTTCTGTTGAT-ATATGTTGTCATGTGTTTTGTTCCGAA  315
            ||||||||| ||| | |||||||| | ||||| | |||| ||||| ||||||||||||||
Sbjct  480  CATCAATGCTGAT-ATGATGTTTTATATTGATCA-ATGTGGTCATATGTTTTGTTCCGAA  537

Query  316  TGTGTGAGACGACATATAGAGGTGAGACTAGC--CGGTGGATA-TTCGGTGACATGTCCT  372
            ||||||| ||||||||| |||||||| ||| |  | | ||| | || | | |||||||||
Sbjct  538  TGTGTGAAACGACATATTGAGGTGAGTCTA-CTTCAG-GGA-AGTTTGATAACATGTCCT  594

Query  373  CA-ATATCGCTGCAAATCTAAGCTGACTTATGGACGTTGTGTCAACATTTTGACACCTAA  431
             |  ||| | |||||||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct  595  -AGTTATAGGTGCAAATCTAAGCTGACTTATGGAAGTTGTGTTAATATTTTGACACCTAA  653

Query  432  ACTAAAAGAGATGTGGGA-ACAAAGGATCAGAGAGGACGCGATTCATGTAACGGATAGAG  490
            | |||||||||||| ||| |||||||||  |||||||  |||||| ||||||||||||||
Sbjct  654  AGTAAAAGAGATGT-GGATACAAAGGATGGGAGAGGATTCGATTCCTGTAACGGATAGAG  712

Query  491  TTTACTGCCCAAACCCGACGTGCTCAGCTTTAATGTCACTAACCGAGCT-GTATCAACTC  549
            |||| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||
Sbjct  713  TTTATTGCCCAAACCCGACGTGCTCAGCTTTAATGTCAGTAACCGAGCTCG-ATCAACTC  771

Query  550  ACTGGA  555
            || |||
Sbjct  772  ACAGGA  777



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26624097910


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5