BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900126
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26160.1 | Symbols: | F-box family protein with a domain of... 649 0.0
> AT2G26160.1 | Symbols: | F-box family protein with a domain
of unknown function (DUF295) | chr2:11137978-11139451 REVERSE
LENGTH=1474
Length=1474
Score = 649 bits (351), Expect = 0.0
Identities = 513/586 (88%), Gaps = 31/586 (5%)
Strand=Plus/Plus
Query 1 ATGGAAATACCTGAGTGGACTGATTTACCTGAAGAACTCATTGATTTAACTGCAAAACGT 60
||||||| |||||||||| |||| ||||||| ||| ||||| ||||||| ||||| |||
Sbjct 1 ATGGAAAAACCTGAGTGGTCTGAATTACCTGGAGACCTCATCAATTTAACCGCAAACCGT 60
Query 61 TTCTCCTCCAACA-TCGACGTCGTCCGTATCCGTAGCATCTGTAAACCCTGGCGATCCGC 119
|||||||||| | | |||||| ||||| | ||||||||||||||||||||||| || ||
Sbjct 61 TTCTCCTCCATTAGT-GACGTCCTCCGTGTACGTAGCATCTGTAAACCCTGGCGTTCGGC 119
Query 120 GGTTGCGACCAAACAAAACAGCTTTCATTTTCAACGACGCAACCTTCCTTCCTCCAACAA 179
|| ||||| | || || || | |||| | | ||||||||||||||||||||||
Sbjct 120 GGCTGCGA-C--ACCGAAGAG----C--TTTC-A--ATGCAACCTTCCTTCCTCCAACAA 167
Query 180 GGA-GATAGAGACTCTTCTCTCTCCGACCACTTTCTTCCGTGTTTA-TGTCCCTTCTTCA 237
|| |||||||||| |||||||||| |||||||||||||||| | | || ||||||||||
Sbjct 168 -GATGATAGAGACTGTTCTCTCTCCCACCACTTTCTTCCGTG-TAACTGGCCCTTCTTCA 225
Query 238 GGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCAGAATCCAGTAAGATTTGT 297
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 226 TGTTCTTACAAAGGATGGCTGATCAGAACCAAACAAGTCTCTGAATCCAGTAAGATTAAT 285
Query 298 CTCTTGTCTCCTTTCTCTCGTCAGCTCCTTGACCC-TTCACAAGAAACCCTAGACCTTTT 356
|||||||||||||||| ||| |||||||| |||| ||||||| ||||||||||||||||
Sbjct 286 CTCTTGTCTCCTTTCTTTCGCCAGCTCCTA-ACCCCTTCACAACAAACCCTAGACCTTTT 344
Query 357 GAAATTTG-GGTTTTCAGAGATTCGAAAATCTTACGAGATTCATATATTTGATAAATATT 415
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 345 GAAATTTGAGGTTT-CAGAGATTCGCCAATCTTACGAGATTCATATATTTGATAAGTATT 403
Query 416 TAATTCATAG-CGTGAAAGGTAAA-ATAGGACCATCACATA-AGTTGTCTAGAGTTGTTT 472
|||| || || ||||| ||||||| | |||||||||||||| | ||||||||||||||||
Sbjct 404 TAATACA-AGGCGTGATAGGTAAAGA-AGGACCATCACATATA-TTGTCTAGAGTTGTTT 460
Query 473 TCCTAGACAATCTGTTTTTCGCAGTCGG-CGAGGATGAGAAAATCTGGTGCTGCAAGAGT 531
|||||||||||||| ||||||||||||| | ||||||| |||||||||||||||||||||
Sbjct 461 TCCTAGACAATCTGATTTTCGCAGTCGGAC-AGGATGACAAAATCTGGTGCTGCAAGAGT 519
Query 532 GGAGAAGAAAGTAGTAGAATTTGGACAAAAATCAAAAACCAA-TTG 576
|||||||| ||||||||||| ||||||||||||||||||||| |||
Sbjct 520 GGAGAAGAGAGTAGTAGAATATGGACAAAAATCAAAAACCAAGTTG 565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5