BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900138

Length=414
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G05670.2 | Symbols:  | signal recognition particle binding |...   387    6e-107


> AT5G05670.2 | Symbols:  | signal recognition particle binding 
| chr5:1695730-1698124 REVERSE LENGTH=1113
Length=1113

 Score =  387 bits (209),  Expect = 6e-107
 Identities = 227/236 (96%), Gaps = 0/236 (0%)
 Strand=Plus/Plus

Query  16   CTCCGAGATGGATCGTCGCACCAGGGTACTGTAACATCAATGGAACCGAATGAAGGCACT  75
            |||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||
Sbjct  370  CTCCGAGATGGATCGTCGCATCAGGGCACTGTAACATCAATGGAACCAAATGAAGGCACT  429

Query  76   TTCGTTCTTCACACTGAAAACACTAAGAAAGGAAAAATCAATCCTGTTCATCTTGTTGAT  135
            || |||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct  430  TTTGTTCTTCACAGTGAAAATACTAAGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGAT  489

Query  136  GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCC  195
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  490  GTTCCTGGGCACTCTCGGCTTCGACCCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCC  549

Query  196  ATTGTGTTTGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGA  251
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  550  ATTGTGTTCGTAGTGGATGCCTTGGAGTTCCTCCCAAACTGTCGTGCAGCTTCAGA  605


 Score =  145 bits (78),  Expect = 4e-34
 Identities = 98/108 (91%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  307  TTCTCCTTCTCGCATTGCTACAACAAAGTCATTGTAGCTGAGGCATCTGGACTCACCGGA  366
            ||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||| ||||||
Sbjct  820  TTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTTACCGGA  879

Query  367  GAAAACGTCCAGATCCAAGACTTCATTCGAGAATACATCAAGCCTTGA  414
            |||| | |||||||  |||||||||||||||||||||||||||| |||
Sbjct  880  GAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGA  927



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19604422110


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5