BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900193

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08598.1 | Symbols:  | transposable element gene | chr4:5480...  73.1    3e-12
  AT5G28464.1 | Symbols:  | transposable element gene | chr5:1039...  69.4    4e-11


> AT4G08598.1 | Symbols:  | transposable element gene | chr4:5480552-5482514 
REVERSE LENGTH=1963
Length=1963

 Score = 73.1 bits (39),  Expect = 3e-12
 Identities = 49/54 (91%), Gaps = 0/54 (0%)
 Strand=Plus/Plus

Query  217  GGATCTCCTCGAGGCTCCGGATCGAATCCATTTCGAGCATCCGGATCGACTCAA  270
            ||||||||| | || || ||||||| ||||||||||||||||||||||||||||
Sbjct  139  GGATCTCCTTGCGGATCTGGATCGATTCCATTTCGAGCATCCGGATCGACTCAA  192


> AT5G28464.1 | Symbols:  | transposable element gene | chr5:10398191-10400049 
FORWARD LENGTH=1859
Length=1859

 Score = 69.4 bits (37),  Expect = 4e-11
 Identities = 50/56 (89%), Gaps = 2/56 (4%)
 Strand=Plus/Plus

Query  216  TGGATCTCCTCGAGGCTCCGGATCGAA-TCCATTTCGAGCATCCGGATCGACTCAA  270
            |||||||||| |||| ||  |||| || ||||||||||||||||||||||||||||
Sbjct  106  TGGATCTCCTTGAGGTTCTAGATC-AACTCCATTTCGAGCATCCGGATCGACTCAA  160



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5