BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900194

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G26390.1 | Symbols:  | Serine protease inhibitor (SERPIN) fa...   488    1e-137


> AT2G26390.1 | Symbols:  | Serine protease inhibitor (SERPIN) 
family protein | chr2:11229087-11230491 REVERSE LENGTH=1170
Length=1170

 Score =  488 bits (264),  Expect = 1e-137
 Identities = 330/360 (92%), Gaps = 11/360 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGTTAGGAAAATCAATTGAGAATCAAAACAACGTCGTGGTAAGACTAGCAAAGAAA  60
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  1    ATGGAGTTAGGAAAATCAATTGAGAACCAAAACAACGTCGTGGCAAGACTAGCAAAGAAA  60

Query  61   GTCATTGATAC-CATG--GCCAATGGCTCCAACGTTGTCTTTTCACCGATGTCAATCAAC  117
            |||||||| ||  |||  |||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   GTCATTGAAACAGATGTCGCCAATGGCTCCAATGTTGTCTTTTCACCGATGTCAATCAAC  120

Query  118  GTTTTGCTTAGCCTCATCGCTGCTGGTTCCAATACTGTCACCAAAGAAGAAATCCTCTCA  177
            |||||||| ||||||||||| |||||||| ||| | ||||||||||||||||||||||||
Sbjct  121  GTTTTGCTCAGCCTCATCGCCGCTGGTTCTAATCCCGTCACCAAAGAAGAAATCCTCTCA  180

Query  178  TTCCTCATGTCACCGTCTACGGATCACCTTAACGCGGTCTTGGCCAAGAT-GACAGACGA  236
            |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| 
Sbjct  181  TTCCTCATGTCACCGTCTACGGATCACCTTAACGCGGTCTTGGCCAAGATCG-CGGACGG  239

Query  237  CGGCACCGAGAGAGAAGTGATTTGTGCTTATCTACGGCTAACGGTGTATGGATTGACAAG  296
            ||||||||||||| | ||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct  240  CGGCACCGAGAGA-A-GTGATTTGTGCTTATCTACGGCTCACGGTGTCTGGATCGACAAG  297

Query  297  TCTGT-TTCTTTGCAA-CCTTCCTTTAAAGAGCTTTTGGAGAAATCGTACAAGGCTACTT  354
            ||| | || |||| || |||||||||||||||||||||||||| || ||||||||| |||
Sbjct  298  TCT-TCTTATTTG-AAGCCTTCCTTTAAAGAGCTTTTGGAGAATTCCTACAAGGCTTCTT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5