BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900198
Length=1551
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26410.1 | Symbols: Iqd4 | IQ-domain 4 | chr2:11234651-11236... 2344 0.0
> AT2G26410.1 | Symbols: Iqd4 | IQ-domain 4 | chr2:11234651-11236936
REVERSE LENGTH=1708
Length=1708
Score = 2344 bits (1269), Expect = 0.0
Identities = 1435/1517 (95%), Gaps = 4/1517 (0%)
Strand=Plus/Plus
Query 37 AAACCCGAGAAACCCAAGAGGAAATGGTCGTTTGGGAAACAAAAGAGTAGAGACTCTTTT 96
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 194 AAACCCGAGAAACCGAAGAGGAAATGGTCGTTTGGGAAACAAAAGAGTAGAGAATCTTTT 253
Query 97 GATTTCCCTGTGGAAGAGACTCCAACGGTTGACCCTTCATCGTCTTCTGTTCATCGGCCA 156
||||||||| |||| ||||||||| |||||||||||||| | |||||||||||||| |||
Sbjct 254 GATTTCCCTCTGGAGGAGACTCCACCGGTTGACCCTTCACCTTCTTCTGTTCATCGTCCA 313
Query 157 TCTCCACCGCCTCCTCCGTTGCCGGATTTTGCTCCTCAGCCGTTGTTACCACCACCATCT 216
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 314 TATCCACCGCCTCCCCCGTTGCCGGATTTTGCTCCTCAGCCGTTGTTACCACCACCGTCT 373
Query 217 CCACCTCCTCCTCCTCCGGCATATACCAGCAATACAAGACTCTATGTTGACTCTAAAGAA 276
|||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||
Sbjct 374 CCACCTCCTCCTCCTCCGGCATATACCATCAATACAAGAATCTATGGTGAGTCTAAAGAA 433
Query 277 GCAAAGAATAGGCAAGCTTTAGCTCTTGCATCGGCTGTTGCAGCCGAAGCAGCTGTGGTA 336
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TCAAAGAATAGACAAGCTTTAGCTCTTGCATCGGCTGTTGCAGCCGAAGCAGCTGTGGTA 493
Query 337 GCTGCACATGCTGCCGCGGAGG-TAGTGCGTCTCACGACCCCTTCCACACATCAGACTGA 395
|||||||||||||||||||||| || | |||||||||||||| || |||| ||| | |||
Sbjct 494 GCTGCACATGCTGCCGCGGAGGTTA-TACGTCTCACGACCCCATCAACACCTCAAATTGA 552
Query 396 GGAATCAAAGGAGGAAACTGCCGCAATCAAGATCCAAAATGCGTATAGATGTTACAAGGC 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 553 GGAATCAAAGGAGGAAACTGCCGCAATCAAGATCCAAAATGCGTATAGATGTTACACGGC 612
Query 456 GAGACGCACTCTTCGTGCGTTGCGAGGAATGGCCAGACTCAAAAGTTTGCTTCAAGGAAA 515
||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||
Sbjct 613 GAGACGCACTCTTCGTGCGCTGCGAGGAATGGCTAGACTCAAAAGTTTGCTGCAAGGAAA 672
Query 516 ATACGTCAAAAGACAAATGAACGCGATGCTTAGCTCAATGCAAACTCTTACACGTTTACA 575
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 673 ATACGTCAAAAGACAAATGAATGCGATGCTTAGCTCAATGCAAACTCTTACACGTTTACA 732
Query 576 AACACAGATTCAAGAAAGGAGGAATCGGTTATCTGCAGAGAACAAAACTCGTCACAGGCT 635
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 AACACAGATTCAAGAGAGGAGGAATCGGTTATCTGCAGAGAACAAAACTCGTCACAGGCT 792
Query 636 GATCCAACAGAAGGGTCACCAGAAAGAAAACCATCAGAATTTGGTTACCGCGGGAAATTT 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GATCCAACAGAAGGGTCACCAGAAAGAAAACCATCAGAATTTGGTTACCGCGGGAAATTT 852
Query 696 TGATTCCAGCAATAAATCAAAGGAACAGATCGTGGCGAGGTCCGTGAATCGAAAAGAAGC 755
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 853 TGATTCCAGCAATAAATCAAAGGAACAGATCGTGGCAAGGTCGGTGAATCGAAAAGAAGC 912
Query 756 TTCTGTAAGACGAGAGAGGGCATTGGCTTATGCTTACAGTCATCAGCAAACGTGGAGAAA 815
||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 913 TTCAGTAAGACGAGAAAGGGCATTGGCGTATGCTTACAGTCATCAGCAAACATGGAGAAA 972
Query 816 TTCTTCAAAACTTCCACACCAGACTTTGATGGACACAAACACAACAGACTGGGGTTGGAG 875
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 973 CTCTTCAAAACTTCCACATCAGACTTTGATGGACACAAACACAACAGATTGGGGTTGGAG 1032
Query 876 TTGGCTTGAGCGTTGGATGGCTTCTCGCCCGTGGGATGCTGAATCCATCGACGATCAAAT 935
|||||||||| | |||||||||||||| |||||||||||||||||||| ||||||||| |
Sbjct 1033 TTGGCTTGAGAGGTGGATGGCTTCTCGTCCGTGGGATGCTGAATCCATTGACGATCAAGT 1092
Query 936 TTCCCTTAAAAACTCTCTTAAACGCGAAAACTCCATCAAGACTTCTCCTGCCAGATCTAA 995
|||| |||||| |||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1093 TTCCGTTAAAAGTTCTCTTAAACGCGAAAACTCGATCAAGAGTTCTCCTGCCAGATCTAA 1152
Query 996 AACACTAAAGTCAGCTAGCCAAGGTTCTATCCAATGGCCTGTAAACAATGATACCAAGAG 1055
||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 1153 AACACAAAAGTCAGCTAGCCAAAGTTCTATTCAATGGCCTGTAAACAATGATACAAAGAG 1212
Query 1056 TAAAAAGATCGAGGTTGCTAATCGCAGGCACAGTATCGGTGGTGGATCATCTTCAAACGC 1115
|| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1213 TAGAAAGATCGAGGTTACTAATCGCAGGCACAGTATCGGTGGTGGATCATCTGAAAACGC 1272
Query 1116 TAAAGATGATGAAAGCGTTGGTAGCTCGTCCTCACGCAGAAATTCCTTGGATAATACACA 1175
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1273 TAAAGATGATGAAAGCGTTGGTAGCTCATCCTCGCGCAGAAATTCGTTGGATAATACACA 1332
Query 1176 AACTGTGAAAGCCAAGGTTAGTGTGGAAACAACAAGCAACGTGACTAATGCGCAACCTGT 1235
|||||||||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 1333 AACTGTGAAATCCAAGGTTAGTGTGGAAACAACAAGCAACGTGAGTAATGCACAAACTGT 1392
Query 1236 GAAACCCAAGGCTAGTGTGGGAACAAAAAGAAACTTGGATAACACGAAAGCTTTGAAATC 1295
|||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1393 GAAACCCAAGGCTAATGTGGGAGCAAAAAGAAACTTGGATAACACGAAAACTTTGAAATC 1452
Query 1296 CAAGTCTAGCGTGGGAACAACAGAAAACTTGGCTAACACGCAAGCTGTGAAATCAAAGGT 1355
||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||| |||||
Sbjct 1453 CAAGTCTAGTGTGGGAACAACAGGAAACTTGGCCAACACGGAAGCTGTGAAATCTAAGGT 1512
Query 1356 TAATGTCGGAACAACAGGTTTGCCAAAGAAGGAGGTTGT-GTCTGATAAGAAGAAAACTC 1414
|||||||||||||||| || ||||||||||||||||||| | |||||||||||||| |||
Sbjct 1513 TAATGTCGGAACAACAAGTATGCCAAAGAAGGAGGTTGTTG-CTGATAAGAAGAAACCTC 1571
Query 1415 CACAGATGGTATTACCAAAGAAGAGGCTTTCATCTTCTACTTCTCTTGGGAAAACGAAGA 1474
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1572 CACAGATGGTATTGCCAAAGAAGAGGCTTTCATCTTCTACTTCTCTTGGGAAAACAAAGA 1631
Query 1475 AATTGTCGGATTCGGATAAAGCAACAACTGGTGCTGCAAATGGAGAGAAGAAGAGAAGAA 1534
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1632 AATTGTCGGATTCGGATAAAGCAACAACTGGTGTTGCAAATGGAGAGAAGAAGAGAAGAA 1691
Query 1535 ACGGTGGTAGCAGTTAA 1551
| |||||||||||||||
Sbjct 1692 ATGGTGGTAGCAGTTAA 1708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76555831125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5