BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg900212 Length=369 Score E Sequences producing significant alignments: (Bits) Value AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related ... 440 4e-123 AT5G44495.1 | Symbols: | ECA1 gametogenesis related family pro... 435 2e-121 > AT5G44555.1 | Symbols: | Encodes a ECA1 gametogenesis related family protein [pseudogene] | chr5:17944809-17945167 FORWARD LENGTH=359 Length=359 Score = 440 bits (238), Expect = 4e-123 Identities = 329/371 (89%), Gaps = 14/371 (4%) Strand=Plus/Plus Query 1 ATGGCTTTCAAAAACGTGTTTTTTC-TCTTAGCGGTTTTATGCATTGCACTGTCTGCAAA 59 ||||| ||||||||||| |||||| || || || || ||||| ||||| |||||||||| Sbjct 1 ATGGCAATCAAAAACGTGATTTTTCTTC-TATCGATTGTATGCGTTGCAATGTCTGCAAA 59 Query 60 TGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTCC 119 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 60 TGCTCAATTACCTCAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCCATTCC 119 Query 120 CGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATATTTTATGAATATTCCAG 178 ||||||| | || | ||||||||||||||| | ||| |||||||||||| ||| Sbjct 120 CGGTGTA-C-----TG---G-TATAACAAAATGTTT-ATCATCCTTTATGAATATTGCAG 168 Query 179 GGTGTATCGCAGAGTTTTCGCAATCTATACTCATTGGAAAGTTTGGAAACATAGGCCCTG 238 ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| Sbjct 169 GGTGTATCGCAGAGTTTTCACAATCTATACTCACTGGAAAGTTTGGCAACATAGGCCCTG 228 Query 239 CTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAATC 298 ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||| Sbjct 229 TTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAACTGTATTCCGCAACTTCCATTCAATC 288 Query 299 CATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCACTTCCTCCTA 358 |||||||||||||| ||||||||||||||||||||||||| ||||||||| || ||| || Sbjct 289 CATTTTTTCCTCCTCTGCTAAAGGAACAATGTTCAAAAACCGTTGGCGCAATTTCTCATA 348 Query 359 CCAAAAAGTAG 369 | | ||||||| Sbjct 349 CGAGAAAGTAG 359 > AT5G44495.1 | Symbols: | ECA1 gametogenesis related family protein | chr5:17926351-17926710 REVERSE LENGTH=360 Length=360 Score = 435 bits (235), Expect = 2e-121 Identities = 322/363 (89%), Gaps = 9/363 (2%) Strand=Plus/Plus Query 1 ATGGCTTTCAAAAACGTG-T-TTTTTCTCTTAGCGGTTTTATGCATTGCACTGTCTGCAA 58 |||||| | ||||||||| | || || || |||||||||||||||||||| |||||| || Sbjct 1 ATGGCTATAAAAAACGTGATCTTATT-TC-TAGCGGTTTTATGCATTGCATTGTCTGTAA 58 Query 59 ATGCTCAATTACCACAATTTCCGGCACCGTTTCCTTTTCCATTTCCATTCCTACCGAGTC 118 |||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||| Sbjct 59 ATGCCCAATTACCACAATTTCCGGCACTTTTTCCTTTTCCATTTCCATTTCTACCGAGTC 118 Query 119 CCGGTGTACCAGGATTGCCTGATATAACAAAATGTTTGA-CATATTTTATGAATATTCCA 177 |||||||||||||||| |||||||||||||||||||| | ||| | | || ||||||||| Sbjct 119 CCGGTGTACCAGGATTACCTGATATAACAAAATGTTT-ATCATCTGTGATAAATATTCCA 177 Query 178 GGGTGTATCGCAGAGTTTTCGCAATCTATACTCATT-GGAAAGTTTGGAAACATAGGCCC 236 ||||| |||| ||||||||||||||| |||||| || | |||||| || || ||||| | Sbjct 178 GGGTGCATCGTAGAGTTTTCGCAATCCATACTC-TTAGAAAAGTTCGGCAAGATAGGTTC 236 Query 237 TGCTTGTTGCAAAGCAATTTTGGAAGCTGAAACCAATTGCATTCCACAACTTCCATTCAA 296 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 237 AGCTTGTTGCAAAGCAATTTTGGAAGCCGAAACCAATTGTATTCCGCAACTTCCGTTCAA 296 Query 297 TCCATTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGCA-CTTCCTC 355 ||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||| Sbjct 297 TCCGTTTTTTCCTCCTATGCTAAAGGAACAATGTTCAAAAACTGTTGGCGGAGCCTCCTA 356 Query 356 CTA 358 ||| Sbjct 357 CTA 359 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17342373405 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5