BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900231
Length=423
Score E
Sequences producing significant alignments: (Bits) Value
AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like su... 370 6e-102
> AT3G46210.1 | Symbols: | Ribosomal protein S5 domain 2-like
superfamily protein | chr3:16976740-16978893 REVERSE LENGTH=1062
Length=1062
Score = 370 bits (200), Expect = 6e-102
Identities = 226/239 (95%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 86 AAGGGGATACAAAAGTTCTAGCTGCAGTATATGGACCAAAAGCAGGAACGAAGAAGAACG 145
||||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||
Sbjct 226 AAGGGGATACAAAAGTTCTAGCTGCGGTTTATGGACCTAAAGCAGGAACGAAAAAGAACG 285
Query 146 AAAATGATGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAAACCGGACAAATTGGAA 205
|||||| ||||||||||||||||||||||||||||||||||||| |||| || |||||||
Sbjct 286 AAAATGCTGAGAAGGCTTGTTTTGAAGTCATATGGAAGCCTAAATCCGGGCAGATTGGAA 345
Query 206 AAGTTGAAAAGGAGTATGAGATGATACTGAAAAGGACGATGCAGAGTATTTGTGTTTTGA 265
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 346 AAGTTGAAAAGGAGTATGAGATGATATTGAAAAGGACGATACAGAGTATTTGTGTTTTGA 405
Query 266 CAGTTAATCCAAATACCACCACCTCAGTGATAATTCAAGTTGTACATGATGATGGTTCT 324
| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 406 CTGTTAATCCAAATACCACCACCTCAGTGATAATTCAGGTTGTGCATGATGATGGTTCT 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20056831851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5