BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900246

Length=273
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G21590.1 | Symbols: APL4 | Glucose-1-phosphate adenylyltrans...   274    3e-73


> AT2G21590.1 | Symbols: APL4 | Glucose-1-phosphate adenylyltransferase 
family protein | chr2:9238482-9242440 FORWARD LENGTH=2034
Length=2034

 Score =  274 bits (148),  Expect = 3e-73
 Identities = 162/169 (96%), Gaps = 0/169 (0%)
 Strand=Plus/Plus

Query  96    GCAAACGGACACAATAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCATACAT  155
             |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1015  GCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCATACAT  1074

Query  156   TGCATCAATGGGAGTTAATTGTTTCACAACCGAAGCTTTGTTGAGCCTTCTAACAAGACA  215
             |||||||||||||||| ||||||||| ||||||||||||| ||| |||||||||||||||
Sbjct  1075  TGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTGCTGAACCTTCTAACAAGACA  1134

Query  216   GTATCCTAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATA  264
             |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1135  GTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATA  1183



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12516669501


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5