BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900325
Length=1164
Score E
Sequences producing significant alignments: (Bits) Value
AT2G26960.1 | Symbols: AtMYB81, MYB81 | myb domain protein 81 |... 1463 0.0
AT4G21440.1 | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102 | ... 60.2 4e-08
> AT2G26960.1 | Symbols: AtMYB81, MYB81 | myb domain protein 81
| chr2:11506065-11507426 REVERSE LENGTH=1285
Length=1285
Score = 1463 bits (792), Expect = 0.0
Identities = 1005/1106 (91%), Gaps = 21/1106 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAAAGTTCGCCACGATTCAGGATCAGACGATGA-AACTTCAATAGATAAATCTTT 59
|||||||||||||| || |||||||||||||||||||| || ||||||| | ||||||||
Sbjct 2 ATGGGGAAAGTTCGTCAAGATTCAGGATCAGACGATGACAA-TTCAATAAAGAAATCTTT 60
Query 60 TACTAAAGGTCCTTGGACACAAGCAGAGGACAACCTTTTGATAGCTTATGTTGATAAACA 119
||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||
Sbjct 61 TACTAAAGGTCCTTGGACACAAGCAGAAGACAATCTTTTGATAGCTTACGTTGATAAACA 120
Query 120 TGGTGATGGAAACTGGAACGCTGTTCAAAAAC-ATTCAGGCCTTTCTCGTTGTGGTAAAA 178
|||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 121 TGGTGATGGAAACTGGAACGCTGTTC-AAAACAACTCGGGCCTTTCTCGTTGTGGTAAAA 179
Query 179 GTTGTCGCCTTCGTTGGGTGAATCATCTGAGACCGGATTTGAAAAAAGGCGCTTTTACAG 238
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 180 GTTGTCGCCTTCGTTGGGTAAATCATCTGAGACCAGATTTGAAAAAAGGCGCTTTTACAG 239
Query 239 AGAAAGAAGAGAAACGTGTTATCGAACTTCATGCTTTGTTAGGAAACAAATGGGCACGAA 298
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 240 AGAAAGAAGAGAAACGTGTCATCGAACTTCATGCTTTGTTAGGGAACAAATGGGCACGAA 299
Query 299 TGGCTGCAGAACTGCCGGGACGAACAGATAATGAGATCAAGAACTTTTGGAATACAAGAC 358
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 TGGCTGAAGAACTACCGGGACGAACAGATAATGAGATCAAGAACTTCTGGAATACAAGAC 359
Query 359 TTAAGAGATTACAACGACTTGGTTTACCGGTTTACCCCGATGAAGTTCGAGAGCAAGCGA 418
|||||||| | ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 360 TTAAGAGACTGCAACGACTTGGTTTACCTGTTTACCCCGATGAAGTTCGAGAGCATGCGA 419
Query 419 TGAATGCAGCGACACAATCTGGTCTAAACACTGATTCTTTGGATGGTCATCATAGTCAAG 478
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 TGAATGCAGCGACACATTCCGGTCTAAACACTGATTCATTGGATGGTCATCATAGTCAAG 479
Query 479 ACTCTTTGGAGGCAGATTGTGTTGAGATCCCTGAATTGGATTTCCAGCATTTACCGCTTA 538
| | | ||||||||||| ||||||||| |||||| |||||||| |||||||||| || |
Sbjct 480 AATATATGGAGGCAGATACTGTTGAGATTCCTGAAGTGGATTTCGAGCATTTACCACTCA 539
Query 539 ATCAATGTTCTTCATACTACCAGTCGATGCTTCG-CAATGTTCCTCCCACTGGCGTCTTT 597
||| || |||||||||||||||||| |||||||| || ||||||||||||| |||||||
Sbjct 540 ATCGATCTTCTTCATACTACCAGTCAATGCTTCGACA-TGTTCCTCCCACTAACGTCTTT 598
Query 598 GTGAGACAAAGACCGTATTTCTTTCAGCCG---AATATGTATAACTTGATAACAACACCT 654
|||||||||| ||||| ||||||||||||| ||| |||||||||||||| || || ||
Sbjct 599 GTGAGACAAAAACCGTGTTTCTTTCAGCCGCCTAATGTGTATAACTTGATACCACCATCT 658
Query 655 CCTTACATGTCTACCGGCAAACGTTCTAGAGAACCAGAAACCGCATTTCC--G---GG-T 708
||||||||||||||||| |||||| ||||||||||||||||||| ||||| | || |
Sbjct 659 CCTTACATGTCTACCGGAAAACGTCCTAGAGAACCAGAAACCGCGTTTCCTTGCCCGGGT 718
Query 709 GGATATGGAATGAACGAGCAAAGCCCTCCGCTTTGGAACTATCCTTTTGTTGAGAACATT 768
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 719 GGATATACCATGAACGAGCAAAGCCCTCGGCTCTGGAACTATCCTTTTGTTGAGAACGTT 778
Query 769 TCAGAACAGTTACCGGATAGTCATTTGTTTGGCAATGCTACTTATTCTTCTTCTCCTGAA 828
||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| |
Sbjct 779 TCAGAACAGTTACCGGATAGTCATTTGCTTGGTAATGCTGCTTATTCTTCTCCTCCTGGA 838
Query 829 CCTCTTATTCAAGGGGTGGAGAAGTTGGAGCTCCCTTCTTTCCAATATCTTGAAGAGCCT 888
|||||| |||| ||||| ||||| || ||| ||||||| |||||||||| ||||||||||
Sbjct 839 CCTCTTGTTCACGGGGTTGAGAATTTCGAGTTCCCTTCATTCCAATATCATGAAGAGCCT 898
Query 889 GGCGGTTGGGGAGCAGAACAATCTGACCAAATGCCGGAACATCATGAGTCAGATAACACT 948
||||||||||||||||| ||| || ||| ||||||||||||| |||||||||||||||
Sbjct 899 GGCGGTTGGGGAGCAGATCAACCTAACCCAATGCCGGAACAT---GAGTCAGATAACACT 955
Query 949 TTGGTCCAATCTCCTCTGACAGATCATACACCATCAGATTGTCCATCATCA-C--TCTAT 1005
||||| |||||||||||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct 956 TTGGTTCAATCTCCTCTGACAGCTCAAACACCATCAGATTGTCCATCATCATCACTCTAT 1015
Query 1006 GATGGATTGTTGGAATCAGTTGTATATGGATCATCAGGTGAAAAACCGGCAACCGATACC 1065
|||||| |||||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1016 GATGGACTGTTGGAATCAGTTGTCTATGGATCATCAGGGGAGAAACCGGCAACCGATACC 1075
Query 1066 GACTCAGAGTCTTCACTTTTTCAGTC 1091
|| ||||| |||||||| ||||||||
Sbjct 1076 GATTCAGAATCTTCACTGTTTCAGTC 1101
> AT4G21440.1 | Symbols: ATMYB102, ATM4, MYB102 | MYB-like 102
| chr4:11418246-11419760 REVERSE LENGTH=1340
Length=1340
Score = 60.2 bits (32), Expect = 4e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 316 GGACGAACAGATAATGAGATCAAGAACTTTTGGAA 350
||| |||||||||||||||||||||||||||||||
Sbjct 400 GGAAGAACAGATAATGAGATCAAGAACTTTTGGAA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57128220210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5