BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900330
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 577 3e-164
> AT2G38780.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 58 Blast hits to
58 proteins in 23 species: Archae - 0; Bacteria - 4; Metazoa
- 1; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes
- 9 (source: NCBI BLink). | chr2:16210857-16214232 FORWARD
LENGTH=1527
Length=1527
Score = 577 bits (312), Expect = 3e-164
Identities = 384/418 (92%), Gaps = 7/418 (2%)
Strand=Plus/Plus
Query 11 AGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCACTTCGAA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGAGTGAGCTTCATGGACTAGCGGCTTTGCAGTGGTCTATTTGTCAGGATTCACTTCGAA 1085
Query 71 AGGCAGAAAAAGCAAGGCGCATATATGAGAAGCTTCTATCCCACCCGAATCCGAGAGTGA 130
|| |||| |||||||||||||| |||||||||||| | ||||| || || ||| ||||||
Sbjct 1086 AGACAGACAAAGCAAGGCGCATGTATGAGAAGCTTATTTCCCATCCAAACCCGGGAGTGA 1145
Query 131 GCAAGAAAGCGAGGCAGTTGATGTTCAGTTTTCAGGCAATGGAGAGGCGGAAGGTTAAGG 190
||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||
Sbjct 1146 GCAAGAAAGCGAGGCAGTTCATGTTCAGTTTTCAGGCAATGGAGATGCTGAAGGTTAAGG 1205
Query 191 GGTCGAGCTT--CATGGAGGGAAACACTGGTTATCAGGACTACTTTGTAGCCTTTGTCAA 248
|||||||||| | || ||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 1206 GGTCGAGCTTTGC-TGAAGG-AAACACTGGTTATCAGGACTACTTTGAAGCCTTTGTTGA 1263
Query 249 AGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGCAATGGGGACAAATGA 308
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1264 AGATAAAACGAATTACAAAGCGCAGGAGGAAAAAGAAGGAGAGGAAATGGGGATAAATGA 1323
Query 309 GACACTCCTATATGTGATTCTTTTTGCGTCTCCGATTCTAATGGTCTTCATTTTGTGGCT 368
|||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||
Sbjct 1324 GACACTCCTATATGTGATTCTTCTTGCTTCTCCGATTCTAATGGTCTTCATT--GTAGCT 1381
Query 369 GCACAGAGAGGGAATATGCACTGAAGTCACAAAATCTTGTCAACTTCTTTACATGTAA 426
|||||||||||| ||| |||||||| |||||| ||||||||| ||||| ||||||||
Sbjct 1382 GCACAGAGAGGGTATACACACTGAAGACACAAATTCTTGTCAATTTCTT-ACATGTAA 1438
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5