BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900335

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27630.1 | Symbols: ACBP5 | acyl-CoA binding protein 5 | chr...   220    4e-57


> AT5G27630.1 | Symbols: ACBP5 | acyl-CoA binding protein 5 | chr5:9776023-9781002 
FORWARD LENGTH=2247
Length=2247

 Score =  220 bits (119),  Expect = 4e-57
 Identities = 138/147 (94%), Gaps = 2/147 (1%)
 Strand=Plus/Plus

Query  1     GTTCAAGGAAAAGCCGAACGCATTATCACAACCCTTAAATTCGAAAAAGAAGAA--GGAG  58
             ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||  ||||
Sbjct  1639  GTTGAAGGAAAAGCCGACCGCATTATCACAACCCTTAAATCCGAAAAAGAAGAAGTGGAG  1698

Query  59    ACATCACTCAACAAGGAAAAGATACTAACTCTTCAACTAAAGGAAGAGTTAGCAGAGATA  118
              |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct  1699  GCATCACTCAACAAGGAAAAGATACAAACTCTCCAACTAAAGGAAGAGTTAGCAGAGATA  1758

Query  119   GACACACGAAATACAGAGTTGTACAAG  145
             |||||||||||||||||||| ||||||
Sbjct  1759  GACACACGAAATACAGAGTTATACAAG  1785



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5