BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900336

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28...   656    0.0  


> AT1G76310.1 | Symbols: CYCB2;4 | CYCLIN B2;4 | chr1:28628046-28630394 
REVERSE LENGTH=1347
Length=1347

 Score =  656 bits (355),  Expect = 0.0
 Identities = 433/469 (92%), Gaps = 11/469 (2%)
 Strand=Plus/Plus

Query  1    ACAAGAAGAGCACTGAGTAATATAAACAAGAACATCATCGGAGCTCCTGTTTATCCTTCT  60
            |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| |
Sbjct  151  ACAAGAAGGGCACTGAGTAATATAAACAAGAACATCATCGGAGCTCCGGTCTATCCTTGT  210

Query  61   GCTGTCAACAAGAGACCATTCAC---CAAGAATGGGATATGTAACAAGAAGATTCCA-C-  115
            |||||   |||||||||||||||    || |||||||| |||||||||||||||||| | 
Sbjct  211  GCTGT---CAAGAGACCATTCACTGAGAAAAATGGGATTTGTAACAAGAAGATTCCACCT  267

Query  116  --TCCATTGCATCGTCCGGTTACTAGGTAAATTTGCTGCTCAGTTAGCTGAGAACAATCC  173
              |||| ||||||| || ||||||||| |||||||||||||| |||||||||||||||| 
Sbjct  268  GTTCCAGTGCATCGACCAGTTACTAGG-AAATTTGCTGCTCAATTAGCTGAGAACAATCT  326

Query  174  CCAAATTCACAAGGAGGAAACCAAGAAACCAGACTTGATTTCGAACGAAACATTAGATAG  233
            |||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct  327  CCAAATCCACAAGGAGGAAACCAAGAAACCAGACTTGATTTCAAACGAAGCATTAGATAG  386

Query  234  AATCATAACAGATGTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACACACTGA  293
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  387  AATCATAACAGATGTGGAAGAAGGAGACTTTAATGAACCAATGTTTGTTCAACATACTGA  446

Query  294  AGCCATGCTTGAAGAGATTGACCGAATGGAAGGAATTGAAATGGAAGATTCAAATGATAT  353
            ||| ||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||
Sbjct  447  AGCAATGCTTGAAGAGATTGACAAAATGGAAGGGATTGAAATGCAAGATTCAAATGATAT  506

Query  354  TGATGTTGAAGTAGAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTCT  413
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  507  TGATGCTGAAGTAGAAGAGTCTGTGATGGATATAGACAGCTGTGACAAGAACAATCCTTT  566

Query  414  AGCTGTAGTTGAATACATTGATGACATATATTGCTTCTACAAGAAAAAT  462
            | ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  567  ATCTGTAGTTGAATACATTAATGACATATATTGCTTCTACAAGAAAAAT  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5