BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900341
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38770.1 | Symbols: EMB2765 | P-loop containing nucleoside t... 1225 0.0
> AT2G38770.1 | Symbols: EMB2765 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein | chr2:16202963-16210338
REVERSE LENGTH=4837
Length=4837
Score = 1225 bits (663), Expect = 0.0
Identities = 728/759 (96%), Gaps = 5/759 (1%)
Strand=Plus/Plus
Query 694 AGGGATGTACAAGCGCGGTATCTACTGCGTTTAGGTCAAGGTGAACAAGAGCTTGCTACT 753
|||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 2882 AGGGATGTACCAGCGCGGTATCTACTTCGTTTGGGTCAAGGTGAACAAGAGCTTGCCACT 2941
Query 754 GATCTTGACTTTAGCAGACAAGGCCGTGTCAATGCCATGCTTGTTCGGCGTCTGGAACTG 813
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2942 GATCTTGACTTTAGCAGACAAGGCCGTGTCAATGCCATGCTTGTTCGGCGTCTGGAACTC 3001
Query 814 CTCAATGAGGTTGAGAGACTAGCAAGGTCTCTTCAGCTTCCAGAGGATGTAGGATATACT 873
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 3002 CTCAGTGAGGTTGAGAGACTAGCAAGATCTCTTCAGCTTCCAGAGGATGTAGGATATACT 3061
Query 874 TGTGAAACAGCTGGGTATTTCTGGTTGCTTCATATATGCTCGCGCTGGGAGCTATTTCTC 933
|||||||||||||| |||||||||||||||||| ||| |||||| |||||||| ||||||
Sbjct 3062 TGTGAAACAGCTGGATATTTCTGGTTGCTTCATGTATACTCGCGTTGGGAGCTGTTTCTC 3121
Query 934 GCTGCTTGTGCAGGAAATGAAGACAATCAATCTTTTGTTCGAGATGGCTTCCCGTTCAAA 993
|| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 3122 GCAGCTTGTGCAGGAAATGAAGACAATCAATCTTTTGTGCGAGATCGCTTCCCGTTCAAA 3181
Query 994 GATTTCTTCTCAGACACCCCTAAACCTGTATTTAGTGGGGAGTCATTTGAGAAAGACATG 1053
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 3182 GATTTCTTCTCAGACACCCCTAAACCTGTTTTTAATGGGGAGTCATTTGAGAAAGACATG 3241
Query 1054 AGGGCAGCTAAAGGTTGTTTCTCTCATATCAAGACTGTGTTCCAAGAGCTAGAAGAGTGT 1113
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3242 AGGGCAGCTAAAGGTTGTTTCTCTCATCTCAAGACTGTGTTCCAAGAGCTAGAAGAGTGT 3301
Query 1114 AGGGCCTTTGAACTACTCAAGTCAACTGCTGATAGAGCAAATTATCTGATGACCAAACAA 1173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3302 AGGGCCTTTGAACTACTCAAGTCAACTGCTGATAGAGCAAATTATCTGATGACCAAACAA 3361
Query 1174 GCAAAGATTGTAGCAATGATGTGTACTCATGCGGCATTAAAGAGGAGAGATTTTCTTCAG 1233
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 3362 GCAAAGATTGTAGCAATGACGTGTACTCATGCTGCATTAAAGAGGAGAGATTTTCTTCAG 3421
Query 1234 TTAGGGTTCAAATATGATAACTCATTGATGGAAGATAGTGCTCAAATTTTGGAAATTGAG 1293
|||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||
Sbjct 3422 TTAGGGTTCAAATATGATAACTTATTGATGGAAGAAAGTGCTCAGATTTTGGAAATTGAG 3481
Query 1294 ACTTTCATACCAATGTTGCTTCAGAGGCAAGAAGATGGTGGTCATGCACGACTCAAGCGC 1353
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3482 ACTTTCATACCAATGCTGCTTCAGAGGCAAGAAGATGGT---CATGCACGACTCAAGCGC 3538
Query 1354 TGTATATTGATTGGTGATCACCACCAGCTGCCTCCCGTGGTGAAGAATATGGCTTTCCAG 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3539 TGTATATTGATTGGTGATCACCACCAGCTGCCTCCCGTGGTGAAGAATATGGCTTTCCAG 3598
Query 1414 AGAAAGATAGTCACATGGATCAGTGTTTGTTTACGAGGT 1452
| || ||||||||||||||||| |||||||||||||||
Sbjct 3599 A-AAT-ATAGTCACATGGATCAGAGTTTGTTTACGAGGT 3635
Score = 819 bits (443), Expect = 0.0
Identities = 540/582 (93%), Gaps = 25/582 (4%)
Strand=Plus/Plus
Query 139 GGTGCTGAGGATGTGTATAGCACATTTAATGTGCTAAT---GAGGAAGCCAAAGGAGAAC 195
|||||||||||||||||| ||||||||||||||||||| |||||| ||||| ||||||
Sbjct 2174 GGTGCTGAGGATGTGTATGGCACATTTAATGTGCTAATGAGGAGGAAACCAAAAGAGAAC 2233
Query 196 AACTTCAAGGCTATTCTGGAATCTATCAGAGATCTCATGAATGAATATTGTATTGTGCCG 255
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 2234 AACTTCAAGGCTATTCTGGAATCTATCAGAGATCTTATGAACGAATATTGTATTGTGCCG 2293
Query 256 GAGTGGTTGCATAATGTTTTTCTTGGGTATGGCAACCCTTCTGCTGCACAGTGGCCTAAT 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 GAGTGGTTGCATAATGTTTTTCTTGGGTATGGCAACCCTTCTGCTGCACAGTGGCCTAAT 2353
Query 316 ATGCCAAACCTGTTGGAAACAGTGGACTTCAAAGATACTTTCCTTAATGCAAATCATCTC 375
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2354 ATGCCAAACCTGTTGGAAATAGTGGACTTCAAAGACACTTTCCTTAATGCAAATCATCTC 2413
Query 376 AGTGAAAGTTTTCCAGATTATGAGGTATCTTTCATCAATGCTGAAGGTGCTGAAGCTCTG 435
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2414 AGTGAAAGTTTTTCAGATTATGAGGTTTCTTTCATCAATGCTGAAGGTGCTGAAGCTCTG 2473
Query 436 GATCCAAGTCCTCCGTTCCGAATCACTCTTCCAAAGACACTAAAAGGAAATGCTGCTATT 495
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 2474 GATCCAAGTCCTCCGTTTCGAATCACTCTTCCAAAGACACTAAAAGGAAATGGTGCTATT 2533
Query 496 TCTGGAAACAAGATATCTGAAGTCAATTCAGCAGACAATGTTAATATGGTGGATGCTTCC 555
||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||
Sbjct 2534 TCTGGAAACAAGATATCTGAAGTGAATCCAGCAGATAATGTTAATATGGTGGATGCTTCC 2593
Query 556 CCGAAGGAGAAACTTATTGTTGAGGCATATACCTCAACCGGACCCAGGGCGTTATCCTCA 615
||||||||||||||||||||||||||||||||| || || |||||||||| |||||||||
Sbjct 2594 CCGAAGGAGAAACTTATTGTTGAGGCATATACCCCA-CCTGACCCAGGGCCTTATCCTCA 2652
Query 616 GGACCAGCCGAAGCAGAACTCAGTT-----------------GG----AGCAATTATCTC 654
||||||||||||||||||||||||| || ||||||||||||
Sbjct 2653 GGACCAGCCGAAGCAGAACTCAGTTAAATTTACACCTACACAGGTTGGAGCAATTATCTC 2712
Query 655 TGGTATTCAGCCTGGGCTAACTATGGTGGTTGGTCCACCAGG 696
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2713 TGGTATTCAGCCTGGGCTAACTATGGTGGTTGGTCCACCAGG 2754
Score = 662 bits (358), Expect = 0.0
Identities = 462/510 (91%), Gaps = 15/510 (3%)
Strand=Plus/Plus
Query 1449 AGGTAGAGCCAGGCCAAGCTTAGCCAAACTCTACAACTGGAGATACAGGGATTTAGGAGA 1508
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 3676 AGGAAGAGCCAGGCCAAGTTTAGCCAAACTCTACAACTGGAGATACAGAGATTTAGGAGA 3735
Query 1509 CCTTTCCATTGTTAAGAAAGCACCCATCTTCCAGAGAGCAAATACTGGATTCTCATATGA 1568
|||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 3736 CCTTTCCATTGTTAAGGAAGCACCCATCTTCCAAAGAGCAAATGCTGGATTCTCATATGA 3795
Query 1569 ATATCAGTTGGTGAATGTGCCTGACTATGAGGGGAAAGGAGAATTGACACCATCTCCATG 1628
|||||||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||
Sbjct 3796 ATATCAGTTGGTGAATGTGCCTGATTATGAGGGGAGAGGAGAATCAACACCATCTCCTTG 3855
Query 1629 GGTTTATCAAAATCAGGGAGAAGCTGAATGTATCGTCAGTGTCTATATATACATGAGATT 1688
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3856 GTTTTATCAAAATCAGGGAGAAGCTGAATATATCGTCAGTGTCTATATATACATGAGATT 3915
Query 1689 GTTAGGATATCCTGTGAATAAGATATCAATATTGACAACATTTAATGGTCAGAAGCTCTT 1748
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3916 GTTAGGATATCCTGCGAATAAGATATCAATATTGACAACATATAATGGTCAGAAGCTCTT 3975
Query 1749 AATCTGTGATGTTATCAACCGTCGATGTGTTCCCTATCCATTCATTGGCCCTCCGAGCAA 1808
|||| |||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||
Sbjct 3976 AATCCGTGATGTTATCAACCGACGATGTGTTCCGTATCCTTTCATTGGCCCGCCGAGCAA 4035
Query 1809 GGCATTTTGGTTGCAATTTTGGTTTTTTGGTGACTACAGTGGACAACAGAATGATTTTAT 1868
|| | | | || | || | | | | || | ||||||||||||||| ||
Sbjct 4036 GG--T---GACTACAGT---GGACAAGT--TC-C-A-AG-G-ACAACAGAATGATTTCAT 4080
Query 1869 ATTGCTCTCTCTTGTACGGACACGCTTTGTAGGTCATCTACGTGATGTAAGAAGGTTGGT 1928
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4081 ATTGCTCTCTCTTGTACGGACACGCTTCGTAGGTCATCTACGTGATGTAAGAAGGTTGGT 4140
Query 1929 AGTTGCAATGTCACGTGCTCGGCTTGGTTT 1958
|||||||||||||||||||||||| |||||
Sbjct 4141 AGTTGCAATGTCACGTGCTCGGCTCGGTTT 4170
Score = 274 bits (148), Expect = 3e-72
Identities = 273/325 (84%), Gaps = 41/325 (13%)
Strand=Plus/Plus
Query 2029 GTGGAGGAAGTTGGAAATCCTTATCTCGTTCATGATGTTGAAGAGCTGGCACACATAGTT 2088
||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 4301 GTGGAGGAAGTTGAAAATTCTTATCTCGTTCATGATGTTGAAGAGATGGCACACATAGTT 4360
Query 2089 CACGATAGGATGAACCAGTTCT---A--C-C-AGGAGC------G--ATA-CAAGAACAA 2132
|||| ||||||||| |||||| | | | |||||| | ||| ||| |||||
Sbjct 4361 GACGACAGGATGAACAAGTTCTACCAGGCACAAGGAGCTTATGAGCAATACCAA-AACAA 4419
Query 2133 CATGCCACAGACGGAAGATGGTAATCACGACATGGAGAGTGATTCAGTAGTAGGAGCTGT 2192
|||| |||||| ||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 4420 CATGGCACAGATGGAAGATGGTAATCACGACATGGAGAGTGATTC---AGT---A---GT 4470
Query 2193 AGATGGTGATGAATCTGAGAAAAATATGCAGCAGCTAAACCAAGCTCCAGACATAGACGG 2252
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 4471 AGATGGTGATGAATCTGAAAAAAATATGCAGCAGCTAAACCAATCTCCAGACATAGACGG 4530
Query 2253 TGAATTATCGAAGGAGGTGG----A-----------CAATAATGGATTTAGCAGTGAGAA 2297
|||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 4531 TGAATTATCGAAGGAGGTGGTTGGAATGGAGGTGGACAATAATGGATTTAGCAGTGAGAA 4590
Query 2298 TGGAAAGGCTGATGAGAAAAATTAG 2322
|||||||||||||||||| ||||||
Sbjct 4591 TGGAAAGGCTGATGAGAAGAATTAG 4615
Score = 233 bits (126), Expect = 5e-60
Identities = 132/135 (98%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 7 TTGTTTTTGCTTTGTATACGCCCTTCATTTGAGCTATTAAGTCCTGAGGAAGCTGATAAA 66
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1907 TTGTTTTTGCTTTGTATACGCCCTTCATTTGAGCCATTAGGTCCTGAGGAAGCTGATAAA 1966
Query 67 GTTACAGTTCCACAGAGGCTCGGGCTTCAGTATGTTCGTGGTTGTGAAATCATCGATATC 126
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 GCTACAGTTCCACAGAGGCTCGGGCTTCAGTATGTTCGTGGTTGTGAAATCATCGATATC 2026
Query 127 CGCGATGAGGAGGGT 141
|||||||||||||||
Sbjct 2027 CGCGATGAGGAGGGT 2041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115260451320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5