BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900344
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
AT2G38950.1 | Symbols: | Transcription factor jumonji (jmj) fa... 876 0.0
> AT2G38950.1 | Symbols: | Transcription factor jumonji (jmj)
family protein / zinc finger (C5HC2 type) family protein | chr2:16260853-16265219
FORWARD LENGTH=2482
Length=2482
Score = 876 bits (474), Expect = 0.0
Identities = 604/663 (91%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 868 GGGTCGTATTACTCTGCCTTTGACACTGGCTTCAACTGTTTGGAGAAAGCAAATTTTGCT 927
|||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1435 GGGTCGTATTACTCTGCCTTTGACTGTGGCTTCAACTGTTTGGAGAAAGCAAACTTTGCT 1494
Query 928 CCACTTGATTGGTTGCCCCATGGGGATATTGCTGTTCAGCTGAATCAAGAGAAGAGTAAA 987
|| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 1495 CCCCTTGATTGGTTGCCCCATGGGGATATTGCTGTTCAGGTGAATCAAGAGATGAGTAAA 1554
Query 988 AAGTCCCTAACATCGTATGATAAGCTATTATTAAGTGCTGCAAGGGAAGCTGTGAAATGT 1047
| ||| || | ||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1555 ACGTCGCTGATATCGTATGATAAGCTATTATTTAGTGCTGCAAGGGAAGCTGTAAAATGT 1614
Query 1048 CTTAAGGAATATGCTTTGTCCAAGAAAAACACAGCATGTTACATGAGATGGAATGATTCT 1107
||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 1615 CTTAAGGAATATGGGTTGTCGAAGAAAAACACAGCATGTTACACGAGATGGAATGATTCT 1674
Query 1108 GGTGGGACGGATGGGTTATTCTCCAACATAGTCAAGTCACGGATCAAGCAGGAGAAAAAC 1167
|||||||||||||||| |||||||||||| |||||||||||||||| | |||||||||
Sbjct 1675 TGTGGGACGGATGGGTTGTTCTCCAACATAATCAAGTCACGGATCAAACTGGAGAAAAAT 1734
Query 1168 AGACTTGAATTTCTTAGT-AATTCACTAGAATCGCAAAGGATGGACAAGAGTTATGATGC 1226
|||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||
Sbjct 1735 AGACGTGAATTTCTTA-TCAGTTCACTAGAATCGCAAAGGATGGACAAGAGTTATGATGC 1793
Query 1227 TGTGACCAAAAGGGAATGCTATGTATGTCTTGGGGATTTGTATCTTTCCGCTGTTAATTG 1286
||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||| ||
Sbjct 1794 TGTGAACAAAAGGGAATGCTGTGTATGTCTTGGGGATTTGTATCTTTCCGCGGTTAACTG 1853
Query 1287 TTCATGCTCTGCTGATCGTTACTCGTGTCTAG-GCCACATGAGGAAGCTCTGTGCATGTC 1345
||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1854 TTCATGCTCTGCTAATCGTTACTCGTGTCT-GAACCACATGAGGAAGCTCTGTGCATGTC 1912
Query 1346 CGTGTGACAGAAAGAGTTTTCTCTATATGTACAATATCGATGAGTTGAATCTTCTCGT-- 1403
||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1913 CGTGTGACAGAAAGAGTTTTCTCTATAGGTACACTATGGATGAGTTGAATCTTCTCGTTG 1972
Query 1404 A-G------AAG--------CTCAGCTCTATGTTCAGATGGGCAGGCATAGATCAAAAAT 1448
| | ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1973 AAGCCCTGGAAGGTAAAAAGCTCAGCTCTATGTTCAGATGGGCAGGCATAGATCAAAAAT 2032
Query 1449 ACTGTGCTTCTCCAGCCACCACAAGTTCACAACCCGAAGGCA-ACAAAGGCAAGGAAACA 1507
|||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||
Sbjct 2033 TCTGTGCTTCTCCAGCCACCACAAGTTCAAAACCCGAAGA-AGACAAAGGCAAGGAAACA 2091
Query 1508 GAT 1510
|||
Sbjct 2092 GAT 2094
Score = 765 bits (414), Expect = 0.0
Identities = 493/528 (93%), Gaps = 17/528 (3%)
Strand=Plus/Plus
Query 1 GTACGGAGAAGACGGCCCCTCAAAGTGTCTGAGACCGAAGTCCTTGAGGAAGTTCCTGTG 60
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 451 GTACGGAGAAGACGGCCCCTCAAAGTGTCTGAGACCAAAGTCCTTGAGGAAGCTCCTGTG 510
Query 61 TTCAACCCAACCGAAGAGGAATTCAGTGATACACTCTCATATATATCAAGCTTGCGTGAC 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 511 TTCAACCCAACCGAAGAGGAATTCAGGGACACACTCTCATATATATCAAGCTTGCGTGAC 570
Query 121 AGAGCTGAGCCGTATGGAATCTGTTGTGTTGTTCCTCCACCTTCATGGAAACCTCCATGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 AGAGCTGAGCCGTATGGAATCTGTTGTGTTGTTCCTCCACCTTCATGGAAACCTCCATGT 630
Query 181 CTTTTCAAGGAGaaaaaaaTATGGGAGGCTTCTACAATTTTCCCTCAAGTTCAGCTCTTT 240
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 631 CTTCTCAAGGAGAAACAAATATGGGAGGCTTCTACATTTTTCCCTCAAGTTCAGCTCTTT 690
Query 241 GGAATTCAGACCAAGAACCCAAAGATTAAAAAGGAGGTTGATGCAGATAGTGATGATGCT 300
|||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 691 GGAATTCAGACCGAGAACCGAAAGATTAAAAAGGAGGTTGATGCAGATAGTAATGATGCT 750
Query 301 GCATCTGAAGGGGTTCAGTT-TG--G--T----C-----C-TGGGTATACTTTGGAGACC 345
|||||||||||||||||||| || | | | | ||||||||||||| || ||
Sbjct 751 GCATCTGAAGGGGTTCAGTTATGTAGAGTAGAACGTGGTCCTGGGTATACTTTGAAGTCC 810
Query 346 TTTAAAAACTTTGCAGATACATACAAGAAGAGTCATTTTATCATGAAGGATGAGGTTTTG 405
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 811 TTTAAAAACTTTGCAGATACATACAAGAAGAGTCATTTTGGCATGAAGGATGAGGTTTTG 870
Query 406 GGTTCAGAGAACTCATCTCCA-CGACTTAAACCAGATGAGCTAACTGTGGCAGACATTGA 464
||||||||||||||||||||| | |||||||||| ||||||||| |||||||||||||||
Sbjct 871 GGTTCAGAGAACTCATCTCCATC-ACTTAAACCAAATGAGCTAATTGTGGCAGACATTGA 929
Query 465 AAAAGAGTATAGACAACTTGTTGAGAGTCCACTTATTGAAATTGGGGT 512
||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 930 AAAAGAGTACAGACAAATTGTTGAGAGTCCACTTATTGAAATTGGGGT 977
Score = 503 bits (272), Expect = 2e-141
Identities = 302/317 (95%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 553 GGTTGGAATCTGAACAGTACGGCTAAGCTTCCTGGTTCTCTTCTATCATTGGAAGGCTGC 612
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1063 GGTTGGAATCTGAACAGTACGGCTAAGCTTCCTGGTTCTCTTCTATCATTAGAAGACTGC 1122
Query 613 GAATCAATTTGTGTTCCTCGCCTAAGTGTAGGAATGTGCTTGTCTTCCCAGTTCTGGGAA 672
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1123 GAATCAGTTTGTGTTCCTCGTCTAAGTGTAGGAATGTGCTTGTCTTCCCAGTTCTGGAAA 1182
Query 673 TCTGAGAAGGAGAGACTCTACTCTCTCTGCTATTTGTATGTGGGCGCTCCTAGAGTGTGG 732
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1183 TCTGAGAAGGAGAGACTCTACTCTCTCTGCTATTTGCATGTGGGCGCTCCTAGAGTGTGG 1242
Query 733 TATTCTGTAGCAGGATGTCATCGATCAAAGTTTAAGGCTGCCATGAAAAGCTTCATCCCT 792
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1243 TATTCCGTAGCAGGATGTCATCGATCAAAGTTTAAGGCTGCCATGAAAAGCTTCATCCTT 1302
Query 793 GAGATGTCAGAAGAACAGCCAAAGAAGAGTTATGATCCTGTGATGATAATGTCTGCTTAT 852
|||||||||| ||||||||||||||||||| || ||||||||||||| |||||| | |||
Sbjct 1303 GAGATGTCAGGAGAACAGCCAAAGAAGAGTCATAATCCTGTGATGATGATGTCTCCATAT 1362
Query 853 CAATTGAGCATGGAGGG 869
||||||||| |||||||
Sbjct 1363 CAATTGAGCGTGGAGGG 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75351018045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5