BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900381
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27080.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 1086 0.0
> AT2G27080.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr2:11566288-11567504
FORWARD LENGTH=1217
Length=1217
Score = 1086 bits (588), Expect = 0.0
Identities = 644/672 (96%), Gaps = 0/672 (0%)
Strand=Plus/Plus
Query 7 GTAATCCAAGTCCCAAAAGATCAAATCTACCGTATCCCACCGCCGGAAAACGCACACCGC 66
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 207 GTAATCCAAGTCCCAAAAGATCAAATCTACCGTATACCACCGCCGGAAAACGCACACCGC 266
Query 67 TTTGAACAACTCTCTCGTaaaaaaaCCAACCGCAGTAACTGTAGATGCTGTTTCTGCTCA 126
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 267 TTTGAACAACTCTCTCGTAAAAAAACCAACCGCAGTAACTGTAGATGCTGCTTCTGCTCA 326
Query 127 TTCCTGGCAACGATTTTCATCTTAATCGTCCTCGCCGGAATATCCTTGGCGATTCTCTAC 186
||||| || || |||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 327 TTCCTCGCCGCGGTTTTCATCTTAATCGTCCTCGCCGGAATATCCTTCGCGGTTCTCTAC 386
Query 187 CTAATCTACCGTCCCGAAGCTCCAAAATACTCTATCGAAGGATTCACAGTTTCCGGTATC 246
||||||||||||||||||||||| |||||||| |||||||||||| | ||||||||||||
Sbjct 387 CTAATCTACCGTCCCGAAGCTCCTAAATACTCCATCGAAGGATTCTCTGTTTCCGGTATC 446
Query 247 AATCTGAATTCAACATCTCCGATTTCGCCGAATTTTAACGTTACCGTTAGATCGCGTAAC 306
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 447 AATCTGAATTCAACATCTCCGATTTCGCCGAGTTTTAACGTTACCGTTAGATCACGTAAC 506
Query 307 GGTAACGGTAAAATCGGGGTTTATTACGAGAAAGAAAGCTCTGTGGATGTTTATTACAAC 366
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 507 GGTAACGGTAAAATCGGGGTTTACTACGAGAAAGAAAGCTCTGTTGATGTGTATTACAAC 566
Query 367 GACGTTGATCTATGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAACG 426
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GACGTTGATATAAGTAACGGTGTTATGCCGGTGTTTTATCAGCCGGCGAAGAATGTAACG 626
Query 427 GTCGTTAGGTTGGCGTTAAGTGGGTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGAG 486
||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 627 GTCGTTAAGTTGGTTTTAAGTGGTTCTAAAATACAGTTGACTAGTGGTATGAGGAAGGAG 686
Query 487 ATGCGTAATGAGGTGAGTAAGAAAACGTTGCCGTTTAAGTTAAAGATTAAAGCTCCGGTG 546
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 687 ATGCGTAATGAGGTGAGTAAGAAAACGGTGCCGTTTAAGTTGAAGATTAAAGCTCCGGTG 746
Query 547 AAGATTAAGGTTGGTTCTGTTAAGACGTGGACTATGATCGTTAATGTTGAGTGTGATGTA 606
||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 747 AAGATTAAGTTTGGTTCTGTTAAGACGTGGACTATGATTGTTAATGTTGACTGTGATGTA 806
Query 607 ACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGTG 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 ACGGTGGATAAATTGACGGCGCCGTCGAGGATTGTGTCGAGAAAATGCAGTCATGACGTG 866
Query 667 GATCTTTGGTGA 678
||||||||||||
Sbjct 867 GATCTTTGGTGA 878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5