BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900382

Length=1131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G60470.1 | Symbols:  | Plant protein of unknown function (DU...   243    4e-63


> AT3G60470.1 | Symbols:  | Plant protein of unknown function (DUF247) 
| chr3:22344813-22347121 FORWARD LENGTH=1860
Length=1860

 Score =  243 bits (131),  Expect = 4e-63
 Identities = 211/249 (85%), Gaps = 8/249 (3%)
 Strand=Plus/Plus

Query  21   TCCAGGAATGTGGCGGTTTCCTACAAATCCCGAG-ATTTGTTGCATCTACAGAGTCCCAG  79
            ||| || |||||| |||||||||||||||| ||| | | ||||||||||| ||||||| |
Sbjct  57   TCCTGGGATGTGGTGGTTTCCTACAAATCCTGAGCA-TCGTTGCATCTACCGAGTCCCTG  115

Query  80   ACTGTCCGCGTAGCGTAAATCCAGAAGCATATACACCTCAATTACTCCTCATTGGACCTC  139
            || |||  ||| | |||||||||||||| || || |||||||||||||||||||||||||
Sbjct  116  ACCGTCTACGTCGTGTAAATCCAGAAGCTTACACGCCTCAATTACTCCTCATTGGACCTC  175

Query  140  TTCACCATTCTTTAAAATCTCAAGCTCTCATGTCTAGTGGAGATATCACATATACAATGT  199
            |||||||||||||||||| |||||||||||  ||| |||||||||||||| | |||| ||
Sbjct  176  TTCACCATTCTTTAAAATTTCAAGCTCTCAACTCTCGTGGAGATATCACAAACACAAAGT  235

Query  200  CAACGGGATACTTAAACATGGAAGAGTGTAAGAAGATTTAC-TTAGCG-GAATTCACACG  257
             || ||| |||||||||||||| |||  ||||||||||||| || ||| || ||| || |
Sbjct  236  TAATGGGCTACTTAAACATGGAGGAGCATAAGAAGATTTACCTT-GCGAGA-TTCTCA-G  292

Query  258  AAGGG-TTG  265
            || || |||
Sbjct  293  AAAGGCTTG  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 55471602225


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5