BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900409

Length=771
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei...   953    0.0  
  AT5G53010.1 | Symbols:  | calcium-transporting ATPase, putative...  71.3    1e-11


> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein 
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539

 Score =  953 bits (516),  Expect = 0.0
 Identities = 552/570 (97%), Gaps = 0/570 (0%)
 Strand=Plus/Plus

Query  6    GGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGCGCTATCCGAGCAAGCTAGGAAAAT  65
            ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct  125  GGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTAGGAAAAT  184

Query  66   TCATCTCGCTGCTTCAGAGTCCGGTGTTGATCGGGATGTTGTGAAGAAAGGATGTGAGAT  125
            |||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  185  TCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGATGTGAGAT  244

Query  126  GTTTCAGAAGTGCGAAGACATGATCAGGAAGCTGGCGCTGTTTTCGTCTAACGAGACTAA  185
            |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct  245  GTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACGAGACTAA  304

Query  186  AGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTACCTTATTACCTTGCGGAGTT  245
            ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  305  AGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTGCGGAGTT  364

Query  246  GACAGAGAAAATCATACAGGACGACCGGATTCCGATTGTCGAAGCCTCGTATGCAAAGTT  305
            ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||| |||||
Sbjct  365  GACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATGCTAAGTT  424

Query  306  GAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAACTTGTTCCGGATGAGGAGTTGGAGGC  365
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  425  GAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGTTGGAGGC  484

Query  366  TTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTGAAGATAGCTCGGTT  425
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  485  TTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAGCTCGGTT  544

Query  426  CAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGAAAGGAGCGACG  485
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  545  CAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGGAGCGACG  604

Query  486  TGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAGAAGATAT  545
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  605  TGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAGATGATAT  664

Query  546  TCCAGATGATGACAGCGAAGAAGAAAGAGA  575
            |||||||||||||||||||||||| |||||
Sbjct  665  TCCAGATGATGACAGCGAAGAAGAGAGAGA  694


> AT5G53010.1 | Symbols:  | calcium-transporting ATPase, putative 
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458

 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 42/44 (95%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  692   GACTTGAAAAAATGGGTGACGACAAGTCTTTTGGGATTGCTCAG  735
             ||||||||||||||||||||||||||||||||||| || |||||
Sbjct  3055  GACTTGAAAAAATGGGTGACGACAAGTCTTTTGGGGTTACTCAG  3098



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 37474673662


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5