BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900410

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei...   917    0.0  


> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein 
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539

 Score =  917 bits (496),  Expect = 0.0
 Identities = 540/561 (96%), Gaps = 3/561 (1%)
 Strand=Plus/Plus

Query  1    ATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGCGCTATTCGAGCAAGCTAGGAAA  60
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  123  ATGGGTGGTTTGGCTATGGAGGAAATGCCTTTATCGGTGCTATTCGAGCAAGCTAGGAAA  182

Query  61   ATTCATCTCGCTGCTTCAGAGTCCGGTGTTGATCAGGATGTTGTGAAGAAAGGATGTGAG  120
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  183  ATTCATCTTGCTGCTTCAGAGTCTGGTGTTGATCAGGATGTTGTGAAGAAAGGATGTGAG  242

Query  121  ATGTTTCAGAAGTGCGAAGACATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACGAGACT  180
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  243  ATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTGGCGCTGTTTTCGTCTAACGAGACT  302

Query  181  AAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTACCTTATTACCTTGCGGAG  240
            ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct  303  AAAGAAGATATTAGCACCAACAATCTCAAATATCTTTTGGTGCCTTATTATCTTGCGGAG  362

Query  241  TTGACAGAGAAAATCATACAGGACGACCGGATTCCGATTGTCAAAGCCTCGTATGCAAAG  300
            ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||
Sbjct  363  TTGACAGAGAAAATCATACAGGAGGACCGGATTCAGATTGTCAAAGCCTCGTATGCTAAG  422

Query  301  TTGAAG---TTCTTTTCGTTCTGTGAGGCAATGGAACTTGTTCCGAATGAGGAGTTGGAG  357
            ||||||   |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct  423  TTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAGCTTGTTCCGGATGAGGAGTTGGAG  482

Query  358  GCTTCTTCACGAGGAGGTTCTGGTGCACTTGCTGATCGTAGGGCTCTGAAGATAGCTCGG  417
            |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct  483  GCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGATCGAAGGGCTCTCAAGATAGCTCGG  542

Query  418  TTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGAAAGGAGCGA  477
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  543  TTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTTGAAATTAAAGAGAGGAAGGAGCGA  602

Query  478  CGTGAACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGAAGAAGAAGAT  537
            |||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct  603  CGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACTCCGGTTGAATCTGGAGAAGATGAT  662

Query  538  ATTCCAGATGATGACAGCGAA  558
            |||||||||||||||||||||
Sbjct  663  ATTCCAGATGATGACAGCGAA  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5