BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg900411 Length=483 Score E Sequences producing significant alignments: (Bits) Value AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei... 750 0.0 > AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539 Length=1539 Score = 750 bits (406), Expect = 0.0 Identities = 446/465 (96%), Gaps = 3/465 (1%) Strand=Plus/Plus Query 19 GATGTTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGACATGATCAGGAAGCTG 78 |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 219 GATGTTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTG 278 Query 79 GCGCTGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTT 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 279 GCGCTGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTT 338 Query 139 TTGGTACCTTATTACCTTGCGGAGTTGACAGAGAAAATCATACAGGACGACCGGATTCCG 198 ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| | Sbjct 339 TTGGTGCCTTATTATCTTGCGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAG 398 Query 199 ATTGTCAAAGCCTCGTATGCAAAGTTGAAG---TTCTTTTCGTTCTGTGAGGCAATGGAA 255 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 399 ATTGTCAAAGCCTCGTATGCTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAG 458 Query 256 CTTGTTCCGAATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACTTGCTGAT 315 ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 459 CTTGTTCCGGATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGAT 518 Query 316 CGTAGGGCTCTGAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTT 375 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 CGAAGGGCTCTCAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTT 578 Query 376 GAAATTAAAGAGAGAAAGGAGCGACGTGAACGTTCCACTAAAGCATCAGCTTTGTCGACT 435 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 579 GAAATTAAAGAGAGGAAGGAGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACT 638 Query 436 CCGGTTGAATCTGAAGAAGAAGATATTCCAGATGATGACAGCGAA 480 ||||||||||||| |||||| |||||||||||||||||||||||| Sbjct 639 CCGGTTGAATCTGGAGAAGATGATATTCCAGATGATGACAGCGAA 683 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23007239326 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5