BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900411

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protei...   750    0.0  


> AT5G53000.1 | Symbols: TAP46 | 2A phosphatase associated protein 
of 46 kD | chr5:21485455-21487991 REVERSE LENGTH=1539
Length=1539

 Score =  750 bits (406),  Expect = 0.0
 Identities = 446/465 (96%), Gaps = 3/465 (1%)
 Strand=Plus/Plus

Query  19   GATGTTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGACATGATCAGGAAGCTG  78
            |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  219  GATGTTGTGAAGAAAGGATGTGAGATGTTTCAGAAGTGCGAAGATATGATCGGGAAGCTG  278

Query  79   GCGCTGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTT  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  279  GCGCTGTTTTCGTCTAACGAGACTAAAGAAGATATTAGCACCAACAATCTCAAATATCTT  338

Query  139  TTGGTACCTTATTACCTTGCGGAGTTGACAGAGAAAATCATACAGGACGACCGGATTCCG  198
            ||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |
Sbjct  339  TTGGTGCCTTATTATCTTGCGGAGTTGACAGAGAAAATCATACAGGAGGACCGGATTCAG  398

Query  199  ATTGTCAAAGCCTCGTATGCAAAGTTGAAG---TTCTTTTCGTTCTGTGAGGCAATGGAA  255
            |||||||||||||||||||| |||||||||   |||||||||||||||||||||||||| 
Sbjct  399  ATTGTCAAAGCCTCGTATGCTAAGTTGAAGGAGTTCTTTTCGTTCTGTGAGGCAATGGAG  458

Query  256  CTTGTTCCGAATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACTTGCTGAT  315
            ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  459  CTTGTTCCGGATGAGGAGTTGGAGGCTTCTTCACGAGGAGGTTCTGGTGCACCTGCTGAT  518

Query  316  CGTAGGGCTCTGAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTT  375
            || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGAAGGGCTCTCAAGATAGCTCGGTTCAAACGTCAAAAGGCTGCAGAGGCAAAGCTTCTT  578

Query  376  GAAATTAAAGAGAGAAAGGAGCGACGTGAACGTTCCACTAAAGCATCAGCTTTGTCGACT  435
            |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  579  GAAATTAAAGAGAGGAAGGAGCGACGTGGACGTTCCACTAAAGCATCAGCTTTGTCGACT  638

Query  436  CCGGTTGAATCTGAAGAAGAAGATATTCCAGATGATGACAGCGAA  480
            ||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct  639  CCGGTTGAATCTGGAGAAGATGATATTCCAGATGATGACAGCGAA  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23007239326


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5