BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900413
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative... 676 0.0
> AT5G53010.1 | Symbols: | calcium-transporting ATPase, putative
| chr5:21488490-21496537 REVERSE LENGTH=3458
Length=3458
Score = 676 bits (366), Expect = 0.0
Identities = 421/448 (94%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 649 GTTTTTGCTCAATCTTCTCCCAGCGACAACCTTCTGCTTGTCCAAGCACTGAAGAAAAGA 708
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2287 GTTTTTGCTCAATCTTCTCCCAACGACAACCTTCTGCTTGTCCAAGCACTGAAGAAAAGA 2346
Query 709 GGGCATATCGTTGCAGCCACTGGGATGGGAATACATGATCCAAATACACTACGCGAGGCT 768
|| ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 2347 GGCCATATAGTTGCAGCCACTGGAATGGGAATACATGATCCAAAAACACTACGCGAGGCT 2406
Query 769 GATGTTAGCCTTGCAATGGGAGTTGGAGGGACCGCAGCAGCAAAAGAGAATTCCGATATC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2407 GATGTTAGCCTTGCAATGGGAGTTGGAGGGACCGCAGCAGCAAAAGAGAATTCCGATTTC 2466
Query 829 ATTATACTAGATGATAATTTTGCTACGATTGTCAAGTGTATCATATGGTCTCGATCTCTA 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2467 ATTATACTAGATGATAATTTTGCTACGATTGTCAAGTGTATCATATGGTCTCGATCTCTG 2526
Query 889 TACACCAATGTACAGAGATCTATCCTATTCCGGCTGACTGTCAGTGTATCAGCATTGGCT 948
|||| |||||| |||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2527 TACAACAATGTCCAGAAATCTATCCTATTCCGCCTCACTGTCAGTGTATCAGCATTGGCT 2586
Query 949 ATCTGTGTGGTTGAGGTTGTAATATATGATGCCTTTCCACTTAACGCCGTGCAGCTAT-T 1007
|||||||||||||||||||| | |||||||| ||||| ||||||||||||||| | | |
Sbjct 2587 GTCTGTGTGGTTGAGGTTGTAGTTTATGATGCATTTCCCCTTAACGCCGTGCAGTT-TCT 2645
Query 1008 ATTGCTTAATCTTATTATCGACATCTTAGGAGCATTAGCGCTGGCATACAGACCAAGAGC 1067
||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2646 GTTGGTTAATCTAATTATCGACATCTTAGGAGCATTAGCTTTGGCATACAGACCAAGATC 2705
Query 1068 TGATGACCACCTAATGGGAAAGCCACCG 1095
|||| |||||||||||||||||||||||
Sbjct 2706 TGATCACCACCTAATGGGAAAGCCACCG 2733
Score = 523 bits (283), Expect = 2e-147
Identities = 372/412 (90%), Gaps = 18/412 (4%)
Strand=Plus/Plus
Query 1154 AGAGACCCTCTTATAA-CAAGACGATGTGGTCCAAGTTGATAATTCAGGTATTTTACCTT 1212
||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2743 AGAGATCCTCTTATAACCAAGACGATGTGGTCCAAGATGATAATTCAGGTATTTTACCTA 2802
Query 1213 GTGTTGTCGCTGGTAATCAAAAATTCTGAGAAGCTACTGAAGCTGAAGCATGGTCATACG 1272
||| | ||||||||| ||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 2803 GTGCTCTCGCTGGTACTCATAAATTCTGAGAAGCTACTGAAGCTGAAGCATGGTCAGACG 2862
Query 1273 GGCAATGCCGAAAAAGTGATGAACACATTCATATTCAATTCCTTTGTCTTCTCCCTGGTT 1332
||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 2863 GGCAATGCCGAAAAAATGATGAACACATTGATATTCAATTCCTTTGTCTTCTACCTGGTT 2922
Query 1333 TGTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAATCCTTAGAGAGAAT 1392
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2923 TTTAATGAGTTTGAAATCCAAAGTGTAGACCAAACCTTCAAAGAAGTCCTTAGAGAGAAT 2982
Query 1393 ATGTTTCTCGTCACAATAACCTCAACTATCATATCTCAAATAATCGTGATCGAGTTTGCC 1452
||||||||||| |||||||||||||||||||||||||| |||||||||||| |||| ||
Sbjct 2983 ATGTTTCTCGTTACAATAACCTCAACTATCATATCTCAGATAATCGTGATCAAGTTCGC- 3041
Query 1453 AG-CATTTTCATTTCTTCCGTCAGGCTAGACTTGAAAAAATGGGTGACGACAAGTCTTTT 1511
|| |||||||||| | | || | |||||||||||||||||||||||||||
Sbjct 3042 AGGCATTTTCATT------G--A--CT----T-GAAAAAATGGGTGACGACAAGTCTTTT 3086
Query 1512 GGGATTGCTCAGCCAAGTCGCCACTCGCTTCCCTTACCCAACCAACCAATAT 1563
||| || |||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct 3087 GGGGTTACTCAGCCAAGTCGCCACTCGCTACCCTTACCCAGCCATCCAATAT 3138
Score = 340 bits (184), Expect = 2e-92
Identities = 203/211 (96%), Gaps = 5/211 (2%)
Strand=Plus/Plus
Query 1 ATGTCGGTGGTTGATGTCTGGGCTGGAGGAATAAGAATGCAAGATATGGA-TACTGTTTC 59
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 1513 ATGTCGGTGGTTGATGTCTGGGCTGGAGGAATAAGAATGCAAGATATGGACGA-TGTCTC 1571
Query 60 ACAGTTGCCCAC-TCTTCTTAAAGAACTAATCATAGAAGGCATTGCCCAAAACACAAATG 118
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1572 ACAGTTGCCCACGT-TTCTTAAAGAACTAATCATAGAAGGCATTGCCCAAAACACAAATG 1630
Query 119 GCAGTGTTGTTTTTGAAACGGGAGTCACTGAACCAGAGGTTTATGGATCACCAACAGAAC 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1631 GCAGTGTTGTTTTTGAAACGGGAGTCACTGAACCAGAGGTTTATGGATCACCAACAGAAC 1690
Query 179 AAGCCATTCTTAACTTGGGGAATAAGCTTGG 209
|||||||||||||||| ||||||||| ||||
Sbjct 1691 AAGCCATTCTTAACTTTGGGAATAAG-TTGG 1720
Score = 209 bits (113), Expect = 5e-53
Identities = 117/119 (98%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 203 AGCTTGGTACACACGCTCATGTTCATTGGAAAGGATCTGCAAAAACTATTCTGAGTTCAT 262
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 AGCTTGGTACACACGCTCACGTTCATTGGAAAGGATCTGCAAAAACTATTCTGAGTTCAT 1870
Query 263 GCGAAGGGTATATGGATGGGGCCAACAACTCCAGAGCTATTGATGAACAGAAACGAAAG 321
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1871 GCGAAGGGTATATGGATGGGGCCAACAACTCCAGAGCTATTAATGAACAGAAACGAAAG 1929
Score = 202 bits (109), Expect = 9e-51
Identities = 144/160 (90%), Gaps = 5/160 (3%)
Strand=Plus/Plus
Query 427 AAGGTTTGCATGGTGACGG-CGGATGACGTTTTGACGGCACAAGCAATAGCAATTAAATG 485
||||||||||||||||||| | |||| | |||||| ||||| |||||||||||| ||||
Sbjct 2128 AAGGTTTGCATGGTGACGGAC-AATGATGGTTTGACTGCACAGGCAATAGCAATTGAATG 2186
Query 486 TGGGATACTGACGAATGCA--T-GCCGTAATATATGGACAGGAGCCCAATTTCGTGAACT 542
||||||||| ||| ||||| | ||||||||||| |||||||||||||||||||||||||
Sbjct 2187 TGGGATACTAACGGATGCATCTGGCCGTAATATAAGGACAGGAGCCCAATTTCGTGAACT 2246
Query 543 TTCCGATCTAGAAAAAGAGCAGATCGCCGGAGACATCTTA 582
|||||||||||||| ||||||||| |||||||||||||||
Sbjct 2247 TTCCGATCTAGAAAGAGAGCAGATTGCCGGAGACATCTTA 2286
Score = 174 bits (94), Expect = 2e-42
Identities = 106/112 (95%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 319 AAGGAAGGACTGCGTTGTGCAGCACTTGCTTATCAACCCTGTGAACTGGGAAGAATTTCA 378
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1960 AAGGAGGGACTGCGTTGTGCAGCACTTGCTTATCAACCCTGTGAACTGGGAAGTCTTCCA 2019
Query 379 ACCATTAAGGAACCTCGAAACCTTGTTTTGTTGGCTATTATTGGTATAAAGG 430
||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2020 ACCATTACGGAACCTCGAAACCTTGTTTTGTTGGCTATTGTTGGTATAAAGG 2071
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5