BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900422
Length=1305
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27220.2 | Symbols: BLH5 | BEL1-like homeodomain 5 | chr2:11... 1214 0.0
AT2G23760.1 | Symbols: BLH4, SAW2 | BEL1-like homeodomain 4 | c... 84.2 3e-15
> AT2G27220.2 | Symbols: BLH5 | BEL1-like homeodomain 5 | chr2:11637164-11639537
REVERSE LENGTH=1492
Length=1492
Score = 1214 bits (657), Expect = 0.0
Identities = 801/869 (92%), Gaps = 15/869 (2%)
Strand=Plus/Plus
Query 435 GGTTGAACAGAGATACGAGCAATACCGTGACCAAATACAGAATATAATCTCATTGTTTGA 494
||| |||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||
Sbjct 489 GGTGGAACAGAGATACAAGCAATACCATGACCAAATGCAGACTATAATCTCATCGTTTGA 548
Query 495 GCAAGCCGCAGGATTAGGCTCAGCAAACTCATACACACATATGGCGTTTCAAACAATATC 554
|||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 549 GCAAGCTGCGGGTTTAGGCTCAGCAAACTCATACACACATATGGCGTTACAAACAATATC 608
Query 555 AAAGCAGTTTCGTGCTGTAAAAGAAATGATATGTTTGCAAATCAAACAAATAAACAAGCT 614
|||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||
Sbjct 609 AAAGCAGTTTCGTGCTGTAAAAGACATGATAAGTTTGCAAATCAAGCAAATAAACAAGCT 668
Query 615 CTTGGGACAAAAGGAATTTGAAGAGCAGCTTAAGCAGTTGGGGAAGATGGCACATCACCA 674
||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 669 CTTGGGACAAAAGGAATTTGACGAGCAGCTTAAGAAGTTGGGAAAGATGGCACATCACCA 728
Query 675 TTCAAATGCTTGGAGACCGCAGAGAGGTTTGCCCGAAAAAGCTGTTTCCGTGCTACGCGC 734
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 729 TTCAAATGCTTGGAGACCGCAGAGAGGTTTGCCCGAAAAAGCTGTTTCCGTTCTACGCTC 788
Query 735 TTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGATTTGGATAAGGTAATGCTTGC 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGATTTGGATAAGGTAATGCTTGC 848
Query 795 CAAACAGACTGGCCTTACTAAGAGTCAGGTGTCAAATTGGTTCATAAATGCTCGAGTTCG 854
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 849 CAAACAGACTGGCCTTACTAAGAGTCAGGTGTCAAATTGGTTCATTAATGCTCGAGTTCG 908
Query 855 AATGTGGAAGCCACTGGTGGAGGAA-TTGTATTTGGAAGAAATGGATATTGAAGAAAGCA 913
||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||
Sbjct 909 AATGTGGAAGCCACTGGTGGAGGAACTT-TATTCGGAAGAAATGGATATTGAAGAAAGCA 967
Query 914 GAAAAGGAAGTAACCGGAATGAACATAGTACTAAAGGTTCATCTTCTAAGCAACCTTACA 973
||||||||||| ||||| | | |||||| |||||||||||||| |||||||| ||||
Sbjct 968 GAAAAGGAAGTGACCGG--T-A---TAGTACCAAAGGTTCATCTTCAAAGCAACCGTACA 1021
Query 974 ATAATACAACTTCAGCTGAATCTTCGAACTCGATCTTACCCGCCTTTCGTCAAGAATTCA 1033
|||||||||||||| ||||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 1022 ATAATACAACTTCAAATGAATCTTCGAACACGATCCTACCCGCCTTTCGTCAAGGATTCA 1081
Query 1034 TTGAAAATGAAACCCCTAGGCAAAATTCATCTTCAAGTTACAGCGTAGT---GAGGTTCA 1090
||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||||
Sbjct 1082 CTGAAACTGAAACCCCTAGGCAAAATTCATCCTCAAGTTGCAGCGTAGTCATGAGGTTCA 1141
Query 1091 -GTAAGCAACACATGAATCATGCTAACTTCATCCATTTCAATGGAGGGTTCGAAAACTAT 1149
| ||||||||||||||||| || ||||||||| ||||||| ||||||||||||||||||
Sbjct 1142 CG-AAGCAACACATGAATCAAGCGAACTTCATCAATTTCAACGGAGGGTTCGAAAACTAT 1200
Query 1150 TACACAATGGTTGGAAATGGTGTCTCCCTTTCCCTTGGCATGCCTCATTCTTGTGACCAA 1209
||||||||| |||||| | |||||||||||||| ||| ||||||||||||||||||||
Sbjct 1201 CACACAATGGATGGAAACAGCGTCTCCCTTTCCCTCGGCCTGCCTCATTCTTGTGACCAA 1260
Query 1210 ACCCTTAAAAACATTCATATTGGGTCAACAAGTCAAGGAAGTGAGATCTCAGGC-ATATA 1268
||| |||| ||||||||| ||| |||||||||||| |||| ||||| ||| ||| |||||
Sbjct 1261 ACCTTTAATAACATTCATTTTGAGTCAACAAGTCATGGAACTGAGAACTC-GGCCATATA 1319
Query 1269 TCCCTCTTCAACTTATCAAATCATGGATT 1297
| | |||||||||||||||||||||||||
Sbjct 1320 TTCATCTTCAACTTATCAAATCATGGATT 1348
Score = 604 bits (327), Expect = 5e-172
Identities = 402/439 (92%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGCTTTCTTCCATGGAGAATCTGAGATGAGAGAACCCTTTTCTGATCTTTTTATG 60
|||||||||||||| | |||||||||||| |||||||||| || ||||||||||||||||
Sbjct 1 ATGGCTGCTTTCTTTCTTGGAGAATCTGAAATGAGAGAACACTCTTCTGATCTTTTTATG 60
Query 61 ATGAATCTGAATCCGTTCCTCGAGCCGACAACAACTACTAATGCTCATAACCATCA-TGT 119
|||| |||||||||||| | ||||| |||||| || |||||||||||| || |||| | |
Sbjct 61 ATGACTCTGAATCCGTTTCGCGAGCAGACAACGACCACTAATGCTCATGACGATCACT-T 119
Query 120 CTACAACTTGTGCTTTGGTTTCCAACAACATAGACCGCGAGATGAAGTAGATCATATAGA 179
|||||||||||||||||||| ||||||| ||||||| ||||||||||||| |||||||||
Sbjct 120 CTACAACTTGTGCTTTGGTTCCCAACAATATAGACCTCGAGATGAAGTAGGTCATATAGA 179
Query 180 ACAAGGAAATTCTTCCATCTCCACGTTTTCAAACGGAGGAGTCTTCAGAGCTTTGGCTCC 239
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 180 ACAAGGAAATTCTTCCATCTCCACTTTTTCAAACGGAGGAGTCTTCAGGGCTTTGGCTCC 239
Query 240 GATCTACTTGAGAGCTGCTCAAGAATTACTCAATGAGATTGTCAACGTTGGAAACGGTAG 299
||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 240 GATCTACTTGAAAGCGGCTCAAGAATTACTCAATGAGATTGTCAATGTTGGAAACGGTAG 299
Query 300 CCATGGGGCAAAACAAGATCGACCGATGAGTAAAGAGTCCACGATTTATGGAGTTGGGGA 359
||| || ||||||||||| |||||| |||||||||||||||||||||||||||||| |||
Sbjct 300 CCACGGCGCAAAACAAGAGCGACCGGTGAGTAAAGAGTCCACGATTTATGGAGTTGAGGA 359
Query 360 CATCAATGGTGGCCATAAGCCTGGCATGGCTTCTTTGCAAATGAAGAAAGCAAAGCTCAT 419
||||||||||||| ||||||||||| | ||| |||||||||||||||||||||| |||||
Sbjct 360 CATCAATGGTGGCTATAAGCCTGGCGTAGCTGCTTTGCAAATGAAGAAAGCAAAACTCAT 419
Query 420 TTCCATGGTTGAAACGGTT 438
||||||| ||||| ||||
Sbjct 420 CTCCATGGGTGAAATGGTT 438
> AT2G23760.1 | Symbols: BLH4, SAW2 | BEL1-like homeodomain 4 |
chr2:10107709-10112823 REVERSE LENGTH=2213
Length=2213
Score = 84.2 bits (45), Expect = 3e-15
Identities = 124/160 (78%), Gaps = 14/160 (9%)
Strand=Plus/Plus
Query 733 GCTTGGCTCTTTGAGCATTTTCTTCATCCATATCCGAGGGAT-TTGGATAAGGTA-ATGC 790
|||||||| || |||||||||||| |||| || || || ||| | ||||| | | | |
Sbjct 1408 GCTTGGCTATTCGAGCATTTTCTTAATCCGTACCCAAGCGATGCT-GATAA-GCACCT-C 1464
Query 791 TT-GCCA-AACAGACTGGCCTTACT-AAG-AGTCAGGTGTCAAATTGGTTCATAAATGCT 846
|| | || ||||||||| ||| | || | ||||||||||||||||||||||||||||
Sbjct 1465 TTAG-CACGACAGACTGG-TTTA-TCCAGAAATCAGGTGTCAAATTGGTTCATAAATGCT 1521
Query 847 CGAGTTCGAATGTGGAAGCCACTGGTGGAGGA-ATTGTAT 885
| ||||| | ||||| ||| ||||||| || || ||||
Sbjct 1522 AGGGTTCGCCTATGGAAACCAATGGTGGAAGAGAT-GTAT 1560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64206497055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5