BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900425
Length=282
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27250.3 | Symbols: CLV3 | CLAVATA3 | chr2:11664986-11665769... 324 3e-88
> AT2G27250.3 | Symbols: CLV3 | CLAVATA3 | chr2:11664986-11665769
REVERSE LENGTH=516
Length=516
Score = 324 bits (175), Expect = 3e-88
Identities = 243/274 (89%), Gaps = 11/274 (4%)
Strand=Plus/Plus
Query 1 ATGGATTC-AAGAAGTCTTGTGCTACT-C--CTACTCTTCTGCCTCTTGTTCCTTCATGA 56
|||||||| ||| ||| || ||||||| | |||||||||||| ||||||||||||||||
Sbjct 26 ATGGATTCGAAG-AGTTTTCTGCTACTACTACTACTCTTCTGCTTCTTGTTCCTTCATGA 84
Query 57 TGCTTCTGGTCTCACTCACGCTAATGCTCACATTCATGGACTTCCCTCCCGCAAGATGAT 116
|||||||| ||||||||| ||| |||||||| |||| |||||| || ||||||||||||
Sbjct 85 TGCTTCTGATCTCACTCAAGCTCATGCTCACGTTCAAGGACTTTCCAACCGCAAGATGAT 144
Query 117 GA--A-G---ATGGAGAGGGAATGGGTAGGAGCTAATGGagaagaagagaaggcgaagaa 170
|| | | ||||| || |||||||| ||||| |||||||||| ||||||||| ||||
Sbjct 145 GATGATGAAAATGGAAAGTGAATGGGTTGGAGCAAATGGAGAAGCAGAGAAGGCAAAGAC 204
Query 171 gaagGGTTTAGGACTACATGAAGAGCTAAGGACTGTTCCTTCAGGACCTGACCCGTTGCA 230
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 205 GAAGGGTTTAGGACTACATGAAGAGTTAAGGACTGTTCCTTCGGGACCTGACCCGTTGCA 264
Query 231 CCATCATGTGAACCCACCAAGACAGCCAAGAAAC 264
||||||||||||||||||||||||||||||||||
Sbjct 265 CCATCATGTGAACCCACCAAGACAGCCAAGAAAC 298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12969079242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5