BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900434

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G40065.1 | Symbols:  | other RNA | chr4:18574503-18575585 RE...   436    1e-121


> AT4G40065.1 | Symbols:  | other RNA | chr4:18574503-18575585 
REVERSE LENGTH=1083
Length=1083

 Score =  436 bits (236),  Expect = 1e-121
 Identities = 353/408 (87%), Gaps = 13/408 (3%)
 Strand=Plus/Plus

Query  275  GTTTCCGTTCTGGCCAT-TG-TTTCTCTGCCTTGGTGTTGTGTTTCG-TATCGAAT-GTC  330
            ||||| ||||| ||||| || ||| ||| |||||||||||||||| |  |||| || |||
Sbjct  411  GTTTCGGTTCTAGCCATCTGCTTTGTCTACCTTGGTGTTGTGTTT-GACATCG-ATGGTC  468

Query  331  CTGGAAAATCTCTCTTTTGTGGTGAGACGGACTCGATGCCTTTTGCCATTGGCTCTTAGC  390
            ||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||||| | 
Sbjct  469  CTGGAAAATCTCTC-CTTGTGATGAGACGGACTCGATGCTTTTTGCCATTGGCTCTTGGA  527

Query  391  T-CATCTTCTTTGGTTGGTTCTTCTGTCTCATCAAGATCTGCTTCGTTTGGAGT-TCGTG  448
            |  |  || |||||||||||||||| |||| | ||||||||||||||||||||| | |||
Sbjct  528  TAAAAATT-TTTGGTTGGTTCTTCTATCTCTTTAAGATCTGCTTCGTTTGGAGTAT-GTG  585

Query  449  GGTCGCTATTTTGCCATCATAAGCGGTATCTCTTCCA-CTTGAGATTATCGACTTCTCGG  507
            |||| ||| ||||||||| ||||  |||| |||||||  || || |||||||||||||||
Sbjct  586  GGTCACTAATTTGCCATCTTAAGTTGTATTTCTTCCAGTTTAAGGTTATCGACTTCTCGG  645

Query  508  GGTTGGTTTGGAACGTTTAATACTACCCAAAGCTCTATCAATTCTTTCAGCAGAGAGAGG  567
            |||||||||||||||||||||||||  ||| |||||||||| |||||||| ||||||| |
Sbjct  646  GGTTGGTTTGGAACGTTTAATACTATTCAATGCTCTATCAAGTCTTTCAGTAGAGAGAAG  705

Query  568  AGCTATTCAATGGGTTTTGATTCGGTTCCTCTCCACAAGATAAATAAGGCATTTGTGCGT  627
            ||||||||||||||||||||||||| || | ||||||||| ||||||| || || |||||
Sbjct  706  AGCTATTCAATGGGTTTTGATTCGGATCTT-TCCACAAGACAAATAAGACAATTATGCGT  764

Query  628  CGATCCCTTAGTTTCAAGTTCAGGCCTTTTCCTTTGAGATTCTCGTGA  675
            ||||| ||||||||||||||||| | ||||||||| |||||||| |||
Sbjct  765  CGATCTCTTAGTTTCAAGTTCAGTCATTTTCCTTTCAGATTCTCATGA  812



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32652195550


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5