BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900438
Length=363
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27315.1 | Symbols: | Protein of unknown function (DUF1278)... 527 3e-149
AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)... 411 3e-114
> AT2G27315.1 | Symbols: | Protein of unknown function (DUF1278)
| chr2:11689591-11689953 REVERSE LENGTH=363
Length=363
Score = 527 bits (285), Expect = 3e-149
Identities = 340/366 (93%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGCAAAGCTGTTGTATCAATCTTGTTAATGGTTTCCCTTTGTGGTACCATTTCT 60
||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 1 ATGGGAAGCAAAGCTATTGTATCAGTCTTGTTAATGGCATCCCTTTGTGGTACCATTT-T 59
Query 61 T-TCACTCAAGGAGTAGCTGAAATGCAAAAG-CAGCCGACATTTCCAGGACTTTTCCCAC 118
| | || |||||||||||||||||||||||| || |||| |||||||||||||||| ||
Sbjct 60 TGTTACACAAGGAGTAGCTGAAATGCAAAAGCCA-CCGATGTTTCCAGGACTTTTCCAAC 118
Query 119 CTGGCTTACCCATTGATCTAGTAAAATGT-TGGTCGTCTCTCTTCAACGTTGAAGGATGT 177
| |||| |||| ||||||| ||||||||| | ||||||||||| ||||||||||||||||
Sbjct 119 CAGGCTCACCCGTTGATCTTGTAAAATGTAT-GTCGTCTCTCTCCAACGTTGAAGGATGT 177
Query 178 GTGCTCGAAATCTCTAAATCAATTTTCTCAGGCAAATTTGAAAATATTGAAGGCGCATGT 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 178 GTGCTCGAAATCTCTAAATCAATTTTCTCCGGCAAATTTGAAAATATTGAAGGCGCATGT 237
Query 238 TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCCATATGTTTCCGTTGAATCCG 297
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 238 TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCGAAATGTTTCCGTTGAATCCG 297
Query 298 TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCGCGTATTGTCCCAAACTCTCCTACACAC 357
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 298 TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCACGTATTGTCCCAAAATCTCCTACACAT 357
Query 358 AACTAA 363
||||||
Sbjct 358 AACTAA 363
> AT5G52965.1 | Symbols: | Protein of unknown function (DUF1278)
| chr5:21478841-21479203 FORWARD LENGTH=363
Length=363
Score = 411 bits (222), Expect = 3e-114
Identities = 319/366 (87%), Gaps = 6/366 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAGCAAAGCTGTTGTATCAATCT-TGTTAATGGTTTCCCTTTGTGGTACCATTTC 59
|||| || |||| || || | ||||||| | ||||||||||||||||||| | ||||||
Sbjct 1 ATGGCAACCAAAACTTTTCTCTCAATCTCT-TTAATGGTTTCCCTTTGTGCTGCCATTT- 58
Query 60 TT-TCACTCAAGGAGTAGCTGAAATGCAAA-AGCAGCCGACATTTCCAGGACTTTTCCCA 117
|| || |||||||||||||| | ||||||| | || || || ||||||||||| ||| |
Sbjct 59 TTGTCTCTCAAGGAGTAGCTCATATGCAAACACCA-CCAACGGTTCCAGGACTTCTCCTA 117
Query 118 CCTGGCTTACCCATTGATCTAGTAAAATGTTGGTCGTCTCTCTTCAACGTTGAAGGATGT 177
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 118 CCTGGCTTACCTATTGATCTTGTAAAATGTTGGTCGTCTCTCTTCAATGTTGAAGGATGT 177
Query 178 GTGCTCGAAATCTCTAAATCAATTTTCTCAGGCAAATTTGAAAATATTGAAGGCGCATGT 237
|||||||| ||| | |||||||||||||| || ||||| |||||| | |||| |||||||
Sbjct 178 GTGCTCGAGATCGCCAAATCAATTTTCTCTGGAAAATTCGAAAATGTCGAAGCCGCATGT 237
Query 238 TGCAAGGCGTTTTCGGCCTTAGATGCCAACTGTTGGCCCCATATGTTTCCGTTGAATCCG 297
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 238 TGCAAGGCGTTTTCAACCTTAGATGCTAACTGTTGGCCCCATATGTTTCCGTTGAATCCA 297
Query 298 TTTTTCCCTCCTCTCCTCAAGGATATTTGTGCGCGTATTGTCCCAAACTCTCCTACACAC 357
||||||||||||||||||||||| | || || || |||||||| ||||| |||||||||
Sbjct 298 TTTTTCCCTCCTCTCCTCAAGGACAACTGCGCTCGCATTGTCCCCAACTCCCCTACACAC 357
Query 358 AACTAA 363
||||||
Sbjct 358 AACTAA 363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17040766911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5