BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900457

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand DNA-...   505    2e-142


> AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding 
| chr1:17561355-17562883 REVERSE LENGTH=969
Length=969

 Score =  505 bits (273),  Expect = 2e-142
 Identities = 419/486 (86%), Gaps = 24/486 (5%)
 Strand=Plus/Plus

Query  1    ATGTGGGACGTGATGGCACGCAAGTGTATTGCGCATCTGAAGCTAAATGATCACATACTT  60
            ||||||||||  |||||||| |  ||||||||||||||||||||||||||||| ||||||
Sbjct  328  ATGTGGGACGCAATGGCACGGACTTGTATTGCGCATCTGAAGCTAAATGATCATATACTT  387

Query  61   GTCTCAGGCCGCCTTGCTTCTTATGGCAAGAGATCCAGCAATGTATATAGCGGCTTAGAT  120
            ||||||||||| ||||  |||||  ||||||| |||||| |||||||||| |||||| ||
Sbjct  388  GTCTCAGGCCGTCTTGAGTCTTACAGCAAGAGCTCCAGCGATGTATATAGTGGCTTAAAT  447

Query  121  CACGAATATCATGTTAAAGTGACAGAAGTGAATTATGTGGCGGCTCCACCAAGTCACGTC  180
            | ||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  448  CTCGATTATCAGGTTAAAGTGGCAGAAGTGAATTATGTGGCGGCTCCACCAAGTCACGTC  507

Query  181  TTAGA-T-TC-----TCCGAAAACCCAAAACCGGAAACAGA--A-GA-ATCCAAGAAT--  227
            ||||| | ||     ||| ||||||||||| || |||||||  | || ||  ||||||  
Sbjct  508  TTAGATTCTCAGATATCCAAAAACCCAAAAACGAAAACAGAGGATGATATTGAAGAATCC  567

Query  228  --G-AAGAT-ATAT-TA-TTGTGGCAAGTC-TCTTTTTCGAATCCATACGATTGGTGGGA  280
              | ||||| | || || |||||||||||| || ||||||||||||||||||||||||||
Sbjct  568  AAGAAAGATGAGATATACTTGTGGCAAGTCTTC-TTTTCGAATCCATACGATTGGTGGGA  626

Query  281  CAACAGGGAGAGATAAGAAGAGCCCAAGGCAACATGACTTTAAACATAAAGATACAGGTG  340
            ||||||| ||| ||||||||| ||||| |||||  |||||||| ||||||||||||||||
Sbjct  627  CAACAGG-AGAAATAAGAAGAACCCAAAGCAACCCGACTTTAAGCATAAAGATACAGGTG  685

Query  341  AAGCTCTCTGGCTT-GACTCTGATATACCAGATTGGATTACTAGACGACTGGAATTCTTC  399
            |||||||||||||| | ||| ||| |||| || ||||||||||||||||| ||||| |||
Sbjct  686  AAGCTCTCTGGCTTTG-CTCAGATTTACCGGACTGGATTACTAGACGACTTGAATTGTTC  744

Query  400  GACCAGAGAAACCGCTGCTACGATGAGGAAAAATCACGTCGTGGCCGTCTTTCTGACTAT  459
            ||||||| ||||||||  |||||||| |||||| ||||||||| ||||||||||||||||
Sbjct  745  GACCAGAAAAACCGCTTTTACGATGAAGAAAAAACACGTCGTGACCGTCTTTCTGACTAT  804

Query  460  ATTTAG  465
            ||||||
Sbjct  805  ATTTAG  810



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5