BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900464
Length=1182
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27500.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1975 0.0
AT2G05790.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 71.3 2e-11
> AT2G27500.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr2:11752170-11754028 REVERSE LENGTH=1557
Length=1557
Score = 1975 bits (1069), Expect = 0.0
Identities = 1146/1183 (97%), Gaps = 5/1183 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACACATAGtctctccttcttcttcagagttcttctcctcctcttccttactctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 185 ATGGCCACACATAGTCTCTCCTTCTTCTTCAGAGTTCTTCTCCTCCTCTTTCTTACTCTC 244
Query 61 tcAGAGAGAATTAAAGGGCAAGGTGTGGGAATCAACTACGGCCAAATTGCTAACAACCTC 120
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 245 TCAGAGAGAATTAAAGGGCAAGGTGTGGGAATCAACTACGGCCAAATAGCAAACAACCTC 304
Query 121 CCATCTCCGGCGAGAGTTGCCGTACTTCTCCGATCACTAAACATCACAAGAGTAAAACTC 180
||||||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||
Sbjct 305 CCATCTCCGGCAAGAGTCGCCGTGCTCCTTCGATCACTAAACATCACAAGAGTAAAACTC 364
Query 181 TACGACGCAGATCCAAACGTTCTCTTCTCCTTCTCAAACTCACAAGTCGATTTCATGATC 240
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 365 TACGACGCAGATCCAAACGTCCTCTTCTCCTTCTCAAACTCACAAGTAGATTTCATGATC 424
Query 241 GGTTTAGGCAACGAGTATCTTCAAAACATGTCAACAGATCCAACCAAAGCTCAAGATTGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GGTTTAGGCAACGAGTATCTTCAAAACATGTCAACAGATCCAACCAAAGCTCAAGATTGG 484
Query 301 TTACAACAAAGACTTGAACCACATATCTCAAAAACTCGAATAACCTCAATCGTTGTCGGT 360
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 485 TTACAACAAAGACTTGAACCACATATCTCAAAAACACGAATAACCTCAATAGTTGTCGGC 544
Query 361 AACGAAATCTTCAAAACCAATGATCATGTCCTCATCGAAAACCTATTACCGGCTATGAAA 420
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 545 AACGAAATCTTCAAAACCAATGATCATGTCCTCATCCAAAGCCTATTACCGGCTATGAAA 604
Query 421 TCGGTTTACGCTGCTTTAACCAATCTTGGTTTAGAGAAACAAGTAACGGTTACTTCAGCT 480
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 605 TCGGTTTACGCTGCTTTAACCAATCTTGGTTTAGAGAAACAAGTAACCGTAACTTCAGCT 664
Query 481 CATTCTTTAGACATTCTTTCAACTTCTTATCCTCCTTCTTCAGGATCATTCAAAGAAGAG 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 665 CATTCTTTAGACATTCTTTCAACATCTTATCCTCCTTCTTCAGGATCATTCAAAGAAGAG 724
Query 541 TTTATTCAATATCTTCAACCACTTCTTGATTTTCATTCTCAAATCAAATCACCTTTCTTG 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 725 TTTATTCAATATCTTCAACCACTTCTTGATTTTCATTCTCAAATCGAATCACCTTTCTTG 784
Query 601 ATTAATGCTTAT-CCTTTCTTTGCTTATAAAGATAGTCCTAAAGAAGTTCCATTAGAGTA 659
|| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 785 ATAAATGCTTATCCCTTT-TTTGCTTATAAAGATAGTCCTAAAGAAGTTCCATTAGAGTA 843
Query 660 TGTTTTGTTTCAACCTAATCAAGGTATGGTTGATCCAAACACTAATCTTCATTATGATAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 844 TGTTTTGTTTCAACCTAATCAAGGTATGGTTGATCCAAACACTAATCTTCATTATGACAA 903
Query 720 CATGTTGTTTGCTCAAGTTGATGCACTTTACTCTGCCATTAAAACTTTGGGACATACCGA 779
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 904 CATGTTGTTTGCTCAAGTTGATGCGCTTTACTCTGCCATTAAGACTTTGGGACATACCGA 963
Query 780 TATCGAGGTTCGGATATCGGAAACCGGTTGGCCGTCGAAAGGAGATGAGAATGAGATCGG 839
||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 964 TATCGAGGTTCGGATATCGGAAACCGGTTGGCCTTCTAAAGGAGATGAGAATGAGATTGG 1023
Query 840 AGCTTCGCCGGAGAACGCGGCTTTGTATAATGGGAACTTGTTGAAGTTGATTCAGCAGAG 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1024 AGCTTCGCCGGAGAACGCGGCTTTGTATAATGGGAATTTGTTGAAGTTGATTCAGCAGAG 1083
Query 900 GAAAGGAACTCCGGCGAAGCAATCTGTTCCTATTGATGTTTATGTGTTTGCTCTGTTTAA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GAAAGGAACTCCGGCGAAGCAATCTGTTCCTATTGATGTTTATGTGTTTGCTCTGTTTAA 1143
Query 960 TGAGAATCTTAAACCGGGTCCGGTTTCTGAGAGGAATTATGGACTTTTTTACCCGGATGG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1144 TGAGAATCTTAAACCGGGTCCGGTTTCTGAGAGGAATTATGGACTTTTTTATCCGGATGG 1203
Query 1020 TAAACCGGTTTACAATGTCGGTATGCAGGGTTATTTACCTGATATTATCTACACTTCAAG 1079
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1204 TAAACCGGTTTACAATGTCGGTATGCAAGGTTATTTACCTGATATTATCTATACTTCAAG 1263
Query 1080 GGCAACTACAATCAAGATTTTGAATTTGTGGAGAGTCGTGATGGGTTTGGCTGTGGCTTG 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 GGCAACTACAATTAAGATTTTGAATTTGTGGAGAGTCGTGATGGGTTTGGCTGTGGCTTG 1323
Query 1140 GTTTATACTCCTCGATATGGGCGACAAGATGAGGATGAGATAA 1182
||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1324 GTTCATACTC---GATATGGGCGACAAGATGAGGATGAGATAA 1363
> AT2G05790.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr2:2199219-2201486 FORWARD LENGTH=1843
Length=1843
Score = 71.3 bits (38), Expect = 2e-11
Identities = 45/48 (94%), Gaps = 2/48 (4%)
Strand=Plus/Plus
Query 797 CGGAAACCGGTTGGCCGTCGAAAGGAGATGAGAATGA-GATCGGAGCT 843
||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 1016 CGGAAACTGGTTGGCCGTCGAAAGGAGATGAGAATGAAG-TCGGAGCT 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58031830020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5