BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900472
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28460.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 1059 0.0
AT1G45243.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 87.9 2e-16
> AT2G28460.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:12166573-12168874 FORWARD LENGTH=2302
Length=2302
Score = 1059 bits (573), Expect = 0.0
Identities = 697/755 (92%), Gaps = 15/755 (2%)
Strand=Plus/Plus
Query 1 ATGTCTCCCGCGAAATC-TATGAGATTTGATCTTGATTGGGTTGATGAAAAGAGGATGAA 59
||||||||||| ||| | || |||||||||||||||||||||| |||||||||||||||
Sbjct 131 ATGTCTCCCGC-AAAACAAATAAGATTTGATCTTGATTGGGTTGGTGAAAAGAGGATGAA 189
Query 60 TTCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTTAATGGATTTGGATTTGCAGCCGAA 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 190 TTCTTTCATTACTAAAGTAATGTCTCTCGTCAGCTCAATGGATTTGGATTTGCAGCCGAA 249
Query 120 GCCGGAGTCGGAGTTCATGTCACTCACTACTCAAGTAATT-TCTCTACTCCACTCTATCG 178
|||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
Sbjct 250 GCCGGAGTCGGAGTTCATGTCACTCACTACTCAAAT-ATTCTCTCTACTCCACTCTATGG 308
Query 179 ATTTAGATTCCATGCCGAAGCCGCTGTCAAATCTCATCTCACTTCTTTCTCAAGGAAACT 238
||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 309 ATTCGGATTCCATGCCGAAGCCGCTCTCAAATCTCATCTCACTCCTTTCTCAAGGAAACT 368
Query 239 TTGACCATAATACCGACTTCAGGTTATTCTTTCGTCAAACAATAGCACTCGAGCCGGAGC 298
|||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 369 TTGACCATAATACCGACTTCAGGTTATTCTTTCGTCAAACTATGGCACTCGAGCCAGAGC 428
Query 299 CAATCTTTGTGTCACTCATCTATCAAATATTCTCCCTCGTAATATCTATGAATTTTAAGA 358
|||| ||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 429 CAATATTTATGTCACTCATCTATCAAATATTCTCCCTAGTAATATCTATGAATACTAAGA 488
Query 359 GGGAGAAGCTTATTTCCTTATGTCCTCAAGCATGCGTAGTATTGGGTAATAAT-GGAATA 417
|||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 489 GGGATAAGCTTATTTCCTTATGTCCTCAAGCATGCGTGGTTTTGGGTAATAATGGGAAT- 547
Query 418 TTTGATGTGATCGTACGTAAACAAGAAGAAGGGC-AGTTTCATCGGGGTAAAGCAATCCC 476
||||| |||||||| |||| || ||||||| | || |||| ||| |||||||||||
Sbjct 548 TTTGAAGTGATCGT---TAAAAAACAAGAAGGTCAAG-CTCATAAGGGCAAAGCAATCCC 603
Query 477 GTGGAGTAGAGATAGCAAGTGGGAATGTCTCCCTTTTAACTGGAAGACATACTGGTCTAC 536
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 604 GTGGAGTAGAGATAGCAAGTGGGAATGTCTTCCTTTTAACTGGAAGACATATTGGTCTAG 663
Query 537 TGGAGAAGATGTTACTCATTTTCGATGTAGAAATTGCGATGGCGACAACCATAAAGAATA 596
|||||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 664 TGGAGATGATGTTACACATTTTCGATGCCGAAACTGCGATGGCGACAACCATAAAGAATA 723
Query 597 T-AACAAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATTCTCTTCAGCTTG 655
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TGAA-AAGGCTCCGGTTGAGATCAAACACTCTCTTCATCGGAAACATTCTCTTCAGCTTG 782
Query 656 TCTTGTTGGATGAGAGTAGTTATACGAGGGTATGCTATTGTTGTGATGAAGATCTCAAAA 715
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 783 TCTTGTTGGATGAGAGTAGTTATACGAGGGTATGCTATTGTTGCGATGAAGATCTCAAAA 842
Query 716 AGATGTTCTATTATTGCCACG-CTTGCGATTTTGG 749
|||||| |||||||| | | |||||||||||||
Sbjct 843 GGATGTTTTATTATTGTCG-GACTTGCGATTTTGG 876
Score = 348 bits (188), Expect = 8e-95
Identities = 219/234 (94%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 845 GGGACTTACACATGAGGCCCGGTTCAACGTGGATCACCTTTGGTAACAAGGTAGATGTTC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 GGGACTTACACATGAGGCCCGGTTCAACGTGGATCACCTTTGGTAACAAGGTAGATGTTC 2066
Query 905 TACCCAACAATAATCGTATGTCTCGATCTATTTGCTCCTTTTGTGCGAAGCACTGTCCAC 964
||| ||||| ||| ||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 2067 TACACAACAGTAACCGTATGTCTCGATCTATTTGCTCCTATTGTGTGAAACACTGTCCAT 2126
Query 965 ATAAAATAGTTTACATGTGTTCTGGATTGATATTATGTTCCCAAAGTTGTGTAGTGCGTA 1024
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2127 ATAAGATAGTTTACATGTGTTCTGGATTGATATTATGTTCCCAAGGTTGTGTAGTGCGTA 2186
Query 1025 GCATATTGCATAAACGCTGG-CGTTACAGAGAGTTAGCTTTTTTGAGTAGGTAT 1077
|||||||||| ||||| ||| |||||||||||||||| ||||||||||| |||
Sbjct 2187 GCATATTGCAGAAACG-TGGACGTTACAGAGAGTTAGAATTTTTGAGTAGATAT 2239
Score = 159 bits (86), Expect = 4e-38
Identities = 94/98 (96%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 748 GGATATGATGGTATTATAAACTATTATAACGATAAATGCTCAGCTTGTATTGGATTGTGC 807
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1553 GGATTTGATGGTGTTATAAACTATTATAACGATAAATGCTCAGCTTGTATTGGACTGTGC 1612
Query 808 AAAGGTGGTTTCTTCTATGAGTGTGGTAAAGAAGGATG 845
|||||||||||||||||||||||||||||| |||||||
Sbjct 1613 AAAGGTGGTTTCTTCTATGAGTGTGGTAAACAAGGATG 1650
> AT1G45243.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr1:17147058-17147849 FORWARD LENGTH=792
Length=792
Score = 87.9 bits (47), Expect = 2e-16
Identities = 62/69 (90%), Gaps = 2/69 (3%)
Strand=Plus/Plus
Query 778 GATAAATGCTCAGCTTG-TATTGGATTGTGCAAAGGTGGTTTCTTCTATGAGTGTGGTAA 836
||||| || |||| ||| | |||| |||||||||| ||||||||||||||||||||||||
Sbjct 157 GATAATTGTTCAGTTTGTTCTTGG-TTGTGCAAAGTTGGTTTCTTCTATGAGTGTGGTAA 215
Query 837 AGAAGGATG 845
|||||||||
Sbjct 216 AGAAGGATG 224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5