BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900473
Length=2457
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28450.1 | Symbols: | zinc finger (CCCH-type) family protei... 3770 0.0
> AT2G28450.1 | Symbols: | zinc finger (CCCH-type) family protein
| chr2:12162051-12165894 REVERSE LENGTH=2692
Length=2692
Score = 3770 bits (2041), Expect = 0.0
Identities = 2328/2462 (95%), Gaps = 37/2462 (2%)
Strand=Plus/Plus
Query 1 ATGGAAACACCATCAATTGAAATCAACGAGCTTCCATTACCCACCAAAACCCTAACACCT 60
||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||
Sbjct 134 ATGGAAACATCATCAATCGAAATCAACGAGCTTCCATTAGCCACCAAAACCCAAACACCT 193
Query 61 CCTGCTTCCGCCGAGCCAATTCCAATGGAGACATCATCAATCGACGAGCTTCCATCGTCC 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CCTGCTTCCGTCGAGCCAATTCCAATGGAGACATCATCAATCGACGAGCTTCCATCGTCC 253
Query 121 GATTCAAATCCAACGGATAGCATTGAAGCCGTTGGTGAGAAACGTAAACGCACCGATGAA 180
||||| ||| ||||||||| ||||||||| |||||||||||||| |||||| ||||||||
Sbjct 254 GATTCGAATGCAACGGATAACATTGAAGCTGTTGGTGAGAAACGGAAACGCGCCGATGAA 313
Query 181 GACGAGAAACCCAATCTCGAATCGTTGGAGACGAAGA-T--TACTCCTTCACCGTGGTGG 237
||||||||| ||||||||||||||| || ||||||| | |||||||||||||||||||
Sbjct 314 GACGAGAAAACCAATCTCGAATCGTCAGACACGAAGATTACTACTCCTTCACCGTGGTGG 373
Query 238 AAAACGAGTCTCTGCTCTTACTTTAGGCGTGAGGCTTCGTGTAGTCATGGAAGCGAGTGT 297
|| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 374 AAGACGAGTCTCTGTTCTTACTTTAGGCGTGAGGCTTCGTGTAGTCATGGAAACGAATGT 433
Query 298 AAATACGCTCACGGTGAGGCGGAGCTCCGGATGAAACCGGATAATACTTGGGATCCGACT 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 AAATACGCTCACGGTGAAGCGGAGCTCCGGATGAAACCGGATAATACTTGGGATCCGACT 493
Query 358 TCCGAGCGTGGAAAGAAGGCGAAGGCTATGAAGATGTCTGAGCAAGAAGAGAAAGAAGAC 417
|| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 494 TCTGAGCGTGGAAAGAAAGCCAAGGCTATGAAGATGTCTGAGCATGAAGAGAAAGAAGAA 553
Query 418 GACGAGGTTTTGTTCACTGAGCAGATGATGGAATCAATTGATGGTGATGAAGGAGGTGGT 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GACGAGGTTTTGTTTACTGAGCAGATGATGGAATCAATTGATGGTGATGAAGGAGGTGGT 613
Query 478 GGTAGTGTTAGTGTTGTTGATTTGTCACTAAGTAAATGTTTGGTGCATTTACCTAATAAA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 GGTAGTGTTAGTGTTGTTGATTTGTCACTAAGTAAATGTTTGGTGCATTTACCTAATAAA 673
Query 538 TGGCAATCTGATGAACTGAAGAAATTTTTAGGAGAGCAGGGAGTTCAATATAAGTCTGCA 597
||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 674 TGGCAATCTGATGAATTGAAGAAATTTTTAGGAGAACAGGGAGTTCTATATAAGTCTGCA 733
Query 598 AAGAAAAGAAGAGGAATGATAGTTGGGTTTGTTACATTTGAGAATGCAGAACAATTGCAG 657
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 734 AAGAAAAGAAGAGGAATGATTGTTGGTTTTGTTACATTTGAGAATGCAGAACAATTGCAG 793
Query 658 AGTGGCGTAGAGATTTTGGATGGGAAAACTGTTAATAGCAGTAATTTGAAGATTGCTGAT 717
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 794 AGTGGCGTGGAGATTTTGGATGGAAAAACTGTTAATAGCAGTAATTTGAAGATTGCTGAT 853
Query 718 GTTCTTCCCCGTACGTTTGACAAGAATGATGCAAGAAAATCGGTTAAAAGTGCTCGTGGC 777
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 854 GTTCTTCCGCGTACATTTGACAAGAATGATGCAAGAAAATCGGTTAAAAGTGCTCGTGAC 913
Query 778 GCTGTGACTCCTTTGGCAGACCTGTCTTATGCTGACCAGCTTGAACaaaaaaaGGCTTCT 837
||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 914 GCTGTGACTCCCTTGGCTTACTTGTCTTATGCTGACCAGCTTGAACAAAAAAAGACTTCT 973
Query 838 ATTGGGCAAATGTTGAAAAAACTTGCGAGGAATGCGCGTAAAGCTTGTCCAAATGGGAAT 897
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 ATAGGCCAAATGCTGAAAAAACTTGCGAGGAATGCGCGTAAAGCTTGTCCAAATGGGAAT 1033
Query 898 TCACTTCCACAATGGGTCCTTACATCTAGAGACAGAGGTGGTCTTGCATGCAACCTCGAG 957
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1034 TCACTTCCACAATGGGTCCTTACATCGAGAGACAGAGGTGGTCTTGCATGCAACCTCGAG 1093
Query 958 GGCATTATAGAATCACCGATTACAAATGGCTACAGGAACAAGTGTGAGTTCTCGGTTGGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 GGCATTATAGAATCACCGATTACAAATGGCTACAGGAACAAGTGTGAGTTCTCGGTTGGA 1153
Query 1018 TTGTCCCTTCAGGGGAAGCCAACTGTTGGATTCAGTCTAGGAAGTTTTTGCGCGGGTGTG 1077
|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1154 TTATCTCTTCAGGGGAAGCCAACTGTTGGATTCAGTCTAGGAAGTTTTTGTGCGGGTGTG 1213
Query 1078 ACAGCAGTCGAGGAGCCTGTGGATTGCCCCAACGTCTCCAAAATTGCTGT-TCAATATGC 1136
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1214 ACAGCAGTCGAGGAGCCTGTGGATTGCCCCAACGTCTCCAAAATTGCT-TCTCAATATGC 1272
Query 1137 TTCAATCTTTCAGAAGTTTATAGAAAAGTCCAAGCTCCAAGTTTGGAATAGGTTTCAACA 1196
|||||| |||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 1273 TTCAATATTTCAGAAGTTTATAGAAAATTCAAAATTCCAAGTTTGGAATAGGTTTCAACA 1332
Query 1197 TAGTGGGTTCTGGCGACAGTTGACGGTTCGAGAAGGGAGAAAACCCGGCGTGTTTTCAAA 1256
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1333 TAGTGGGTTCTGGCGGCAATTGACGGTTCGAGAGGGGAGAAAACCCGGCGTGTTTTCAAA 1392
Query 1257 TGATGAAGATGCTATTACAAGAATTGCGGAGGTTATGCTTATTGTTCAGGTTTGTTTAAC 1316
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1393 TGATGAAGATGCTATTACAAGAATCGCGGAGGTTATGCTTATGGTTCAGGTTTGTTTAAC 1452
Query 1317 TGATTCTGACGAGGCAGAAGTGGCCACTGAGTTTGAAGAAATGGCGAAAGCGTTTGCTGA 1376
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1453 TGGTTCTGATGAGGCAGAAGTGGCCACTGAGTTTGAAGAATTGGCGAAAGCGTTTGCTGA 1512
Query 1377 AGGAGCTAGAGCAAGCTCTCCAACTCTTCCCCTGACTGTATTAGTTGTCCAGAATCACTC 1436
||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 1513 AGGAGCTAGAGCAAGCTCTCCTACTCTTCCTCTGACTGTATTAGTTGTTCAGAATCACTC 1572
Query 1437 AGGAATATCAAATGTTGCACCACCCGATTCTCCACTACAAGTGCTGCCTATTCCAATGTT 1496
|||||||||||||||||||||||| ||| ||||||| ||||||||| |||||||||| ||
Sbjct 1573 AGGAATATCAAATGTTGCACCACCTGATGCTCCACTGCAAGTGCTGGCTATTCCAAT-TT 1631
Query 1497 -AGATAATGGGACAAATCAGGAGCAAACCACCAATGTATTGACTGAAGCTCGGATTCATG 1555
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1632 CAGATAATGGGACAGATCAGGAGCAAACCACCAATGTCTTGACTGAAGCTCGGATTCATG 1691
Query 1556 ATCATATTAACAACCTTCGGTTCAGCATATCCCCAACAGCATTTTTTCAGGTTAATACCG 1615
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 ATCACATTAACAACCTTCGGTTCAGCATATCCCCAACAGCATTTTTTCAGGTTAATACCG 1751
Query 1616 TCACCGCAGAGAAGTTATACACAATTGCTGGAGACTGGGCTGACCTTGGTCCCGACACTT 1675
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1752 TCACCGCAGAGAAGTTATACTCAATTGCTGGAGACTGGGCTGACCTTGGTCCCGACACTT 1811
Query 1676 TACTCTTCGATGTATGCTGTGGAACTGGAACAATCGGGCTTACACTGGCACATCTTGTTG 1735
| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1812 TGCTCTTCGATGTATGCTGTGGAACTGGAACAATTGGGCTTACACTGGCACATCGTGTTG 1871
Query 1736 GCATGGTAATTGGCATAGAAATGAATGCTTCGGCTGTAGCAGATGCCGAACGGAATGCAA 1795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 GCATGGTAATTGGCATAGAAATGAATGCTTCGGCTGTAGCAGATGCCGAACGGAATGCAA 1931
Query 1796 CGATCAATGGCATAAGCAACTGCAAGTTCATCTGCTCAAAGGCATGCATTTTGACAATAA 1855
||||||||||||| || || | | ||| | || | | || | || | |
Sbjct 1932 CGATCAATGGCAT----AA--GC-A----A-CTG--C-AA-G--TTCA-TCTG-C--T-- 1967
Query 1856 CATATCTCGCAGAGAATGTTATGAGCTCTCTACTTAAACAGTACCTAGATGTGACTGAAA 1915
|| | |||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1968 CA-A--AGGCAGAGGATGTTATGAGCTCTCTACTTAAACAGTACCTAGATGTGACTCAAA 2024
Query 1916 TGGAAGAAGCTAAGCCTCTAAGTAATGCTAACGATGATCTCGACAAACAAATTTCCTCAA 1975
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 2025 TGGAAGAAGCTAAGCCTCTAAGTAATGCTAACGATGATCTCAACAAACAAATTCCCTCAA 2084
Query 1976 CAGAAGAAATGTCAAACTCAGAGCATGTAGCTGATCAAAACCTACCTCCTACAAACTCTC 2035
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2085 CAGAAGAAATGACAAACTCAGAGCATGTAGCTGATCAAAACCTACCTCCTTCAAACACTC 2144
Query 2036 GAGTAGAAGACCTTCAAAACAATGAGCAGAAGGATATTTCCTCGTCCGTAGAACCCGAAA 2095
||| ||||| |||||| ||||||||||||||| | |||||||||| ||||||| ||||
Sbjct 2145 AAGTGGAAGAACTTCAAGACAATGAGCAGAAGG--A-TTCCTCGTCCTTAGAACCGGAAA 2201
Query 2096 AATCTACAAAACCACAGTTCAAAAATGTGGTTGCTATAGTCGATCCACCTCGTTCTGGAC 2155
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2202 AAACTACAAAACCACAGTTCAAAAATGTGGTTGCTATAGTCGATCCACCTCGCTCTGGAC 2261
Query 2156 TTCATCCAGCTGTAATCAAAGCTCTAAGAACCCATCCCCGGTTAAAGAGACTTGTGTACA 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2262 TTCATCCAGCTGTAATCAAAGCTCTAAGAACCCATCCCCGGTTAAAGAGACTTGTGTACA 2321
Query 2216 TTTCGTGCAACCCTGAAACGCTAGTGGCAAACGCGATAGAGCTTTGCACGCCATCTTTTG 2275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2322 TTTCGTGCAACCCTGAAACGCTAGTGGCAAACGCGATAGAGCTTTGCACGCCATCTTTTG 2381
Query 2276 ATGAAGCGGATAGAGGAAACAAAAATTACAGAGGGCGCAAGAAAATAGGCATTGCCGCTT 2335
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2382 ATGAACCGGATAGAGGAAACAAAAATTACAGAGGGCGCAAGAAAATAGGCATTGCCGCTT 2441
Query 2336 TGGCTCGACATAGAGCCAAGTCAATGCCAACTTCTGAGGCTTTTAGACCTGTCAAAGCCA 2395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2442 TGGCTCGACATAGAGCCAAGTCAATGCCAACTTCTGAGGCTTTTAGACCTGTCAAAGCAA 2501
Query 2396 TGGCCGTTGACCTTTTTCCCCACACTGACCACTGCGAAATGGTAATGCTCCTTGAGAGGT 2455
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2502 TGGCCGTTGACCTTTTCCCCCACACTGACCACTGCGAAATGGTAATGCTCCTTGAGAGGT 2561
Query 2456 AA 2457
||
Sbjct 2562 AA 2563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121905671490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5