BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg900496 Length=1275 Score E Sequences producing significant alignments: (Bits) Value AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 1234 0.0 AT3G17320.1 | Symbols: | F-box and associated interaction doma... 115 1e-24 AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 75.0 2e-12 AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-... 63.9 4e-09 > AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | chr2:12054736-12056452 REVERSE LENGTH=1717 Length=1717 Score = 1234 bits (668), Expect = 0.0 Identities = 1046/1216 (86%), Gaps = 75/1216 (6%) Strand=Plus/Plus Query 1 ATGGGCCTTGAGCCCATTACTATAAAGCCCAAATT--CAAAG---AGCTTATATCAC-CA 54 ||||||||||| |||||||| |||||||||||||| |||| || ||||||||| | Sbjct 334 ATGGGCCTTGA-CCCATTACCATAAAGCCCAAATTGAAAAAGATAAG-TTATATCACTAA 391 Query 55 AAGACCCGCAAG-AGATGGTGGATTGATAGACACGGAAAAGAGAGATTTGCGAGGTTAGG 113 |||| || | ||| | ||||||||||||||||||||||||||| | || || || Sbjct 392 AAGA-GGGCGTGAAGA-GATGGATTGATAGACACGGAAAAGAGAGA---GAGATTTTGGG 446 Query 114 -G-TTGGATCCGAAGATGTTAGATCTTCCAAGTGATATGGAGGAGGAGGTGCTCTCTAGG 171 | || ||| |||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 447 AGATTCGATTCGAAGATGTTCGATCTTCCAATTGATATGGAGGAGGAGGTGCTCTCTAGG 506 Query 172 GTTCCGGTGACATCTCTGGGGAAACTGCGATTGACCTGTAAAAAGTGGAACACTTTAACG 231 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 507 GTTCCGGTGAAATCTCTGGGGAAACTGCGATTGACCTGCAAAAAGTGGAACACTATAACG 566 Query 232 AAAAGTGAGAGCTTTTT--A-AAG----A-A-GAATGGAATTGAGGTGGTGATGCTGGTG 282 ||||||||||||||||| | ||| | | |||||||||||||||||||||| || || Sbjct 567 AAAAGTGAGAGCTTTTTAAAGAAGAAACAGAGGAATGGAATTGAGGTGGTGATGATGATG 626 Query 283 GAATCTAGAGTTTCCTTGATGACCGTCGATTTACTCTATCCGTCTATAGAGCGTATCGGT 342 || | ||||||||||||||||| ||| ||| |||||| |||||||||||| | ||| ||| Sbjct 627 GACTATAGAGTTTCCTTGATGAGCGTAGATCTACTCTCTCCGTCTATAGATCCTATAGGT 686 Query 343 AATCTCGATGCAGATGGAATCAAAATATCTAAAATCTTTCACTGCCAAGG-TTTATTCTT 401 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 687 AATCTCAATGCAGATGGAATCAAAATATCTAAAATCTTTCACTGCCAAGGGTTTATTCTT 746 Query 402 ATGCATCAACAAGGACAAAGACAAAGACTCCTCTAGGCTTGTTGTTTTGAACCCTTTTTT 461 ||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||| ||| Sbjct 747 ATGCATCAACAAGGACAGAGACAAAGACTCTTCTAGGGTTGTTGTTTGGAACCCTTATTT 806 Query 462 GGGACAAACAAGGTATATCGAATTACCTAGAAATTCT-TCTTACCACATACG-G-GAGAA 518 ||||||||||||||||||||||||||||||||||||| ||| |||||| | | | | ||| Sbjct 807 GGGACAAACAAGGTATATCGAATTACCTAGAAATTCTATCT-ACCACA-A-GTGCGTGAA 863 Query 519 GTACGCTCTGGGATACGAGAAAAAGAATCACAAAGTCTTGAGATTTGTGAATGAGTACTA 578 ||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||| Sbjct 864 GTACGCTCTCGGATACGAGAAAAAGAATCACAAAATCTTGAGATTCGTGAATGAGTACTT 923 Query 579 CGAGATCAGT-GGCGACCGAATTTGTGAGCTTCAGATGTACAGTTTAAACTCCAATTCAT 637 |||| |||| || ||||||||| ||||||||||||| ||||||||| |||||||||||| Sbjct 924 GGAGACCAGTAGG-GACCGAATTCGTGAGCTTCAGATTTACAGTTTATACTCCAATTCAT 982 Query 638 GGAAGGTCATTGATGATTTCACTCCGGACTGGTATATTTCGTATCAAT-ACAGTGGCGTG 696 || |||||||||||||||||||||| ||||||||||||| ||| ||| ||||||||||| Sbjct 983 GGGAGGTCATTGATGATTTCACTCCAGACTGGTATATTTTGTA-CAAACACAGTGGCGTG 1041 Query 697 TCTATAAAGGGCAACACTTACTGGTATGCTCAAGATGAGATCCCATTTGATGGTCGGAT- 755 ||| ||||||| ||||||||||||||||| | ||| |||||||||||| |||||| | Sbjct 1042 TCTCTAAAGGGAAACACTTACTGGTATGCCCTAGAAGAGATCCCATTTCATGGTCT-ACC 1100 Query 756 ATCA---GATCACTCTAATTTTCTACTATCCTTTGATTTTACAACCGAGAGATTTGGACC 812 |||| |||||| || |||||||||||||||||||||| ||| || |||| ||| Sbjct 1101 ATCACTAGATCACCCTGATTTTCTACTATCCTTTGATTT--CAA--GA----TTTGAACC 1152 Query 813 GCGTCTGCCTCTGCCTTTCC-ACGCTTTCTATAGACATAATGTCACTTTTTCTAGTGTTA 871 |||||||||||||||||||| | || | | | || ||| ||| || || ||||||||| Sbjct 1153 GCGTCTGCCTCTGCCTTTCCGA-GCCGTATTTGGAGATACTGTGACGCTTGCTAGTGTTA 1211 Query 872 GAGAAGAGCAGCTTGCAGTACTGTTTCAGTCAAGATATGAACTTGATTCCGTCGTCAAGA 931 |||||||||||||||| || |||||||| | | | | || |||||||| ||| Sbjct 1212 GAGAAGAGCAGCTTGCGGTGCTGTTTCAC-CG-G----G--C---AT-CCGTCGTCGAGA 1259 Query 932 TATGGATTACTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAACTTGTTGTTTGCTG 991 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1260 TATGGATTACTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAACTTGTTATTTGCTG 1319 Query 992 TTGATATGAAACCAGTCGCTGGTTTTCAGTTTCCTTATGTCGCTGGGAGTTTCTTCGTTG 1051 |||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||| Sbjct 1320 TTGATATGAAACCAGTCGCTGGTTTTTGGTTTCCTAATGTCGGTAGGAGTTTCTTCGTTG 1379 Query 1052 ACGAGGATAAGAAGGTCGCGGTTGTGGTTGATAAAGAGG-A-TA-A-A--TGTCACC--C 1103 ||||||| ||||||||||||||||| ||||||||||| | || | | ||||||| | Sbjct 1380 ACGAGGAGAAGAAGGTCGCGGTTGTTCTTGATAAAGAGATAATAGACAAATGTCACCTTC 1439 Query 1104 ----TCACAACATAGTTTACATCATTGGAGATAATGGAATCTTGAATAAAGTGGATCTAG 1159 || ||| || | ||||||||||||| ||||||||||||||| |||||||||||| | Sbjct 1440 CCGCTCGCAATATTGCTTACATCATTGGAAATAATGGAATCTTGAGTAAAGTGGATCTTG 1499 Query 1160 GCGAATCTACAGACAA 1175 ||||||||| |||||| Sbjct 1500 GCGAATCTAGAGACAA 1515 > AT3G17320.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:5915427-5916656 REVERSE LENGTH=1230 Length=1230 Score = 115 bits (62), Expect = 1e-24 Identities = 163/210 (78%), Gaps = 13/210 (6%) Strand=Plus/Plus Query 772 TTTC-TACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-TT 829 |||| |||||| ||||||||||||| |||| ||||||| |||||||||||||||| || Sbjct 786 TTTCTTACTATGTTTTGATTTTACAATAGAGAAATTTGGATCGCGTCTGCCTCTGCCATT 845 Query 830 TCCACGCTTTCTATAGA-CATAATGTCACTTTTTCTAGTGTTAGAGAAGAGCAGCTTGCA 888 | | || || | | || ||| | ||| | |||||||||||||||||| | ||||| Sbjct 846 T-C-GGCCTTGTGTTGATGATACCATAACTCTATCTAGTGTTAGAGAAGAGAAACTTGCG 903 Query 889 GTACTGTTTCAGTCAAGATATGAACTTGATTCCGTCGTC-AAGATATGGATTACTAATAA 947 || | | |||| | ||| | | | || ||| | | ||||||||||| |||||| Sbjct 904 GTGTTATATCAG-C--GAT-GGGA--T-ATAACGTGGACGGGGATATGGATTAGTAATAA 956 Query 948 GATTGAGCCTAATGCAGTGTCGTGGAGCAA 977 |||||||||||||||||||||||||||||| Sbjct 957 GATTGAGCCTAATGCAGTGTCGTGGAGCAA 986 > AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508 FORWARD LENGTH=2038 Length=2038 Score = 75.0 bits (40), Expect = 2e-12 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 776 TACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-TTT 830 |||||| ||||||||||||||||||||||||||||||||| || ||||||| ||| Sbjct 1557 TACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTTTGTCTCTGCCGTTT 1612 > AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-11564833 REVERSE LENGTH=1776 Length=1776 Score = 63.9 bits (34), Expect = 4e-09 Identities = 53/62 (85%), Gaps = 1/62 (2%) Strand=Plus/Plus Query 770 ATTTTCTACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-T 828 ||||| |||| | |||||||||||||||||||||||||||| | ||| |||||||| | Sbjct 1202 ATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCCTCTGCCGT 1261 Query 829 TT 830 || Sbjct 1262 TT 1263 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62700480705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5