BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900496
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28280.1 | Symbols: | pseudogene, hypothetical protein | ch... 1234 0.0
AT3G17320.1 | Symbols: | F-box and associated interaction doma... 115 1e-24
AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-... 75.0 2e-12
AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-... 63.9 4e-09
> AT2G28280.1 | Symbols: | pseudogene, hypothetical protein |
chr2:12054736-12056452 REVERSE LENGTH=1717
Length=1717
Score = 1234 bits (668), Expect = 0.0
Identities = 1046/1216 (86%), Gaps = 75/1216 (6%)
Strand=Plus/Plus
Query 1 ATGGGCCTTGAGCCCATTACTATAAAGCCCAAATT--CAAAG---AGCTTATATCAC-CA 54
||||||||||| |||||||| |||||||||||||| |||| || ||||||||| |
Sbjct 334 ATGGGCCTTGA-CCCATTACCATAAAGCCCAAATTGAAAAAGATAAG-TTATATCACTAA 391
Query 55 AAGACCCGCAAG-AGATGGTGGATTGATAGACACGGAAAAGAGAGATTTGCGAGGTTAGG 113
|||| || | ||| | ||||||||||||||||||||||||||| | || || ||
Sbjct 392 AAGA-GGGCGTGAAGA-GATGGATTGATAGACACGGAAAAGAGAGA---GAGATTTTGGG 446
Query 114 -G-TTGGATCCGAAGATGTTAGATCTTCCAAGTGATATGGAGGAGGAGGTGCTCTCTAGG 171
| || ||| |||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 447 AGATTCGATTCGAAGATGTTCGATCTTCCAATTGATATGGAGGAGGAGGTGCTCTCTAGG 506
Query 172 GTTCCGGTGACATCTCTGGGGAAACTGCGATTGACCTGTAAAAAGTGGAACACTTTAACG 231
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 507 GTTCCGGTGAAATCTCTGGGGAAACTGCGATTGACCTGCAAAAAGTGGAACACTATAACG 566
Query 232 AAAAGTGAGAGCTTTTT--A-AAG----A-A-GAATGGAATTGAGGTGGTGATGCTGGTG 282
||||||||||||||||| | ||| | | |||||||||||||||||||||| || ||
Sbjct 567 AAAAGTGAGAGCTTTTTAAAGAAGAAACAGAGGAATGGAATTGAGGTGGTGATGATGATG 626
Query 283 GAATCTAGAGTTTCCTTGATGACCGTCGATTTACTCTATCCGTCTATAGAGCGTATCGGT 342
|| | ||||||||||||||||| ||| ||| |||||| |||||||||||| | ||| |||
Sbjct 627 GACTATAGAGTTTCCTTGATGAGCGTAGATCTACTCTCTCCGTCTATAGATCCTATAGGT 686
Query 343 AATCTCGATGCAGATGGAATCAAAATATCTAAAATCTTTCACTGCCAAGG-TTTATTCTT 401
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 687 AATCTCAATGCAGATGGAATCAAAATATCTAAAATCTTTCACTGCCAAGGGTTTATTCTT 746
Query 402 ATGCATCAACAAGGACAAAGACAAAGACTCCTCTAGGCTTGTTGTTTTGAACCCTTTTTT 461
||||||||||||||||| |||||||||||| |||||| ||||||||| |||||||| |||
Sbjct 747 ATGCATCAACAAGGACAGAGACAAAGACTCTTCTAGGGTTGTTGTTTGGAACCCTTATTT 806
Query 462 GGGACAAACAAGGTATATCGAATTACCTAGAAATTCT-TCTTACCACATACG-G-GAGAA 518
||||||||||||||||||||||||||||||||||||| ||| |||||| | | | | |||
Sbjct 807 GGGACAAACAAGGTATATCGAATTACCTAGAAATTCTATCT-ACCACA-A-GTGCGTGAA 863
Query 519 GTACGCTCTGGGATACGAGAAAAAGAATCACAAAGTCTTGAGATTTGTGAATGAGTACTA 578
||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 864 GTACGCTCTCGGATACGAGAAAAAGAATCACAAAATCTTGAGATTCGTGAATGAGTACTT 923
Query 579 CGAGATCAGT-GGCGACCGAATTTGTGAGCTTCAGATGTACAGTTTAAACTCCAATTCAT 637
|||| |||| || ||||||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 924 GGAGACCAGTAGG-GACCGAATTCGTGAGCTTCAGATTTACAGTTTATACTCCAATTCAT 982
Query 638 GGAAGGTCATTGATGATTTCACTCCGGACTGGTATATTTCGTATCAAT-ACAGTGGCGTG 696
|| |||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||
Sbjct 983 GGGAGGTCATTGATGATTTCACTCCAGACTGGTATATTTTGTA-CAAACACAGTGGCGTG 1041
Query 697 TCTATAAAGGGCAACACTTACTGGTATGCTCAAGATGAGATCCCATTTGATGGTCGGAT- 755
||| ||||||| ||||||||||||||||| | ||| |||||||||||| |||||| |
Sbjct 1042 TCTCTAAAGGGAAACACTTACTGGTATGCCCTAGAAGAGATCCCATTTCATGGTCT-ACC 1100
Query 756 ATCA---GATCACTCTAATTTTCTACTATCCTTTGATTTTACAACCGAGAGATTTGGACC 812
|||| |||||| || |||||||||||||||||||||| ||| || |||| |||
Sbjct 1101 ATCACTAGATCACCCTGATTTTCTACTATCCTTTGATTT--CAA--GA----TTTGAACC 1152
Query 813 GCGTCTGCCTCTGCCTTTCC-ACGCTTTCTATAGACATAATGTCACTTTTTCTAGTGTTA 871
|||||||||||||||||||| | || | | | || ||| ||| || || |||||||||
Sbjct 1153 GCGTCTGCCTCTGCCTTTCCGA-GCCGTATTTGGAGATACTGTGACGCTTGCTAGTGTTA 1211
Query 872 GAGAAGAGCAGCTTGCAGTACTGTTTCAGTCAAGATATGAACTTGATTCCGTCGTCAAGA 931
|||||||||||||||| || |||||||| | | | | || |||||||| |||
Sbjct 1212 GAGAAGAGCAGCTTGCGGTGCTGTTTCAC-CG-G----G--C---AT-CCGTCGTCGAGA 1259
Query 932 TATGGATTACTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAACTTGTTGTTTGCTG 991
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1260 TATGGATTACTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAACTTGTTATTTGCTG 1319
Query 992 TTGATATGAAACCAGTCGCTGGTTTTCAGTTTCCTTATGTCGCTGGGAGTTTCTTCGTTG 1051
|||||||||||||||||||||||||| ||||||| |||||| | |||||||||||||||
Sbjct 1320 TTGATATGAAACCAGTCGCTGGTTTTTGGTTTCCTAATGTCGGTAGGAGTTTCTTCGTTG 1379
Query 1052 ACGAGGATAAGAAGGTCGCGGTTGTGGTTGATAAAGAGG-A-TA-A-A--TGTCACC--C 1103
||||||| ||||||||||||||||| ||||||||||| | || | | ||||||| |
Sbjct 1380 ACGAGGAGAAGAAGGTCGCGGTTGTTCTTGATAAAGAGATAATAGACAAATGTCACCTTC 1439
Query 1104 ----TCACAACATAGTTTACATCATTGGAGATAATGGAATCTTGAATAAAGTGGATCTAG 1159
|| ||| || | ||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1440 CCGCTCGCAATATTGCTTACATCATTGGAAATAATGGAATCTTGAGTAAAGTGGATCTTG 1499
Query 1160 GCGAATCTACAGACAA 1175
||||||||| ||||||
Sbjct 1500 GCGAATCTAGAGACAA 1515
> AT3G17320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5915427-5916656 REVERSE LENGTH=1230
Length=1230
Score = 115 bits (62), Expect = 1e-24
Identities = 163/210 (78%), Gaps = 13/210 (6%)
Strand=Plus/Plus
Query 772 TTTC-TACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-TT 829
|||| |||||| ||||||||||||| |||| ||||||| |||||||||||||||| ||
Sbjct 786 TTTCTTACTATGTTTTGATTTTACAATAGAGAAATTTGGATCGCGTCTGCCTCTGCCATT 845
Query 830 TCCACGCTTTCTATAGA-CATAATGTCACTTTTTCTAGTGTTAGAGAAGAGCAGCTTGCA 888
| | || || | | || ||| | ||| | |||||||||||||||||| | |||||
Sbjct 846 T-C-GGCCTTGTGTTGATGATACCATAACTCTATCTAGTGTTAGAGAAGAGAAACTTGCG 903
Query 889 GTACTGTTTCAGTCAAGATATGAACTTGATTCCGTCGTC-AAGATATGGATTACTAATAA 947
|| | | |||| | ||| | | | || ||| | | ||||||||||| ||||||
Sbjct 904 GTGTTATATCAG-C--GAT-GGGA--T-ATAACGTGGACGGGGATATGGATTAGTAATAA 956
Query 948 GATTGAGCCTAATGCAGTGTCGTGGAGCAA 977
||||||||||||||||||||||||||||||
Sbjct 957 GATTGAGCCTAATGCAGTGTCGTGGAGCAA 986
> AT3G49510.1 | Symbols: | F-box family protein | chr3:18353842-18356508
FORWARD LENGTH=2038
Length=2038
Score = 75.0 bits (40), Expect = 2e-12
Identities = 51/56 (91%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 776 TACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-TTT 830
|||||| ||||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1557 TACTATGTTTTGATTTTACAACCGAGAGATTTGGACCGCGTTTGTCTCTGCCGTTT 1612
> AT1G32140.1 | Symbols: | F-box family protein | chr1:11562742-11564833
REVERSE LENGTH=1776
Length=1776
Score = 63.9 bits (34), Expect = 4e-09
Identities = 53/62 (85%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 770 ATTTTCTACTATCCTTTGATTTTACAACCGAGAGATTTGGACCGCGTCTGCCTCTGCC-T 828
||||| |||| | |||||||||||||||||||||||||||| | ||| |||||||| |
Sbjct 1202 ATTTTATACTGTGTTTTGATTTTACAACCGAGAGATTTGGACAGATTCTTCCTCTGCCGT 1261
Query 829 TT 830
||
Sbjct 1262 TT 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62700480705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5