BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900503

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G58250.1 | Symbols:  | TRAF-like family protein | chr3:21570...   211    3e-54


> AT3G58250.1 | Symbols:  | TRAF-like family protein | chr3:21570745-21572143 
REVERSE LENGTH=954
Length=954

 Score =  211 bits (114),  Expect = 3e-54
 Identities = 169/195 (87%), Gaps = 5/195 (3%)
 Strand=Plus/Plus

Query  25   AGAAAGAGGAAGCTGGTGAGACTCGGGA-GAAAAGAAATTGAGGAAGAGTTGAAGGATTT  83
            ||||||||| |||||||||||||| ||| |  | ||||||| ||||||||||||||||||
Sbjct  740  AGAAAGAGGCAGCTGGTGAGACTC-GGATG-CATGAAATTGGGGAAGAGTTGAAGGATTT  797

Query  84   GAAGCTGAAGTGTTCAAGGC-TCAAAACTCATTTGGAGAAGGTGAAGCGAAAGTGTTCAG  142
            |||||||||||||||| | | || || |||| ||||| || |||||| | ||||||||||
Sbjct  798  GAAGCTGAAGTGTTCA-GACCTCGAAGCTCAGTTGGATAAAGTGAAGTGGAAGTGTTCAG  856

Query  143  ACCTCGAAGCTCAACTGTTGGACGAAAAGGCAAAGGTTTTGGCTGCCATAGCTCCACTCT  202
            |||||||||||||  || || | ||||||||| | |||||||||||||||||||||||| 
Sbjct  857  ACCTCGAAGCTCAGTTGGTGAAGGAAAAGGCAGATGTTTTGGCTGCCATAGCTCCACTCG  916

Query  203  CGTCGTCTGATGACG  217
             ||||||||||||||
Sbjct  917  GGTCGTCTGATGACG  931



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5