BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900521

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28105.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nucleic a...   743    0.0  


> AT2G28105.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Nucleic 
acid-binding, OB-fold-like (InterPro:IPR016027), Replication 
factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits 
to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr2:11976303-11977913 FORWARD 
LENGTH=1003
Length=1003

 Score =  743 bits (402),  Expect = 0.0
 Identities = 469/502 (93%), Gaps = 2/502 (0%)
 Strand=Plus/Plus

Query  1    ATGGAAGCCACTGAGACGGTTCTTTGCTCGTTGCTTGCCGTCGACCTCACCGATTATTGC  60
            |||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  303  ATGGAAGCCACTGAAACGGTTCTTTGCACGTTGCTTGCCGTCGACCTCACAGATTATTGC  362

Query  61   TACAGAGTTTGTTCTCGCTGCCAGAGAGTCCTCCCTTCAGATAACAATGGCCTTGCTTCT  120
            || |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||
Sbjct  363  TATAGAGTTTGTTCTCGCTGCCAGAGAGTTCTTCCTTCAGATAACAATGGCTTTGCTTCT  422

Query  121  TCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  423  TCTTCATTTTGCAAATTCTGCAAATCAAAAGAACCAAAACTTCTCTATCGGATTCTCATG  482

Query  181  TCTATAGCAACAGATACATCAGTGAAAACTGTGATCTGTTTTGATAGAGCTGCCACTGTT  240
            || |||||||||||| ||||||||||||||||||| || |||||||||||||| ||||||
Sbjct  483  TCAATAGCAACAGATGCATCAGTGAAAACTGTGATATGCTTTGATAGAGCTGCAACTGTT  542

Query  241  CTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCA  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  543  CTCTTTGGTTGTTCAGCTGATGAGTTCTTCCACTTCACTAAGCTCAATCCATTAGCCGCA  602

Query  301  TCAAAGGTTAATCAGATCTTTGATGGAGAAATGCTAAGGATGACATTAACTCGGCCTCAC  360
            |||| ||| |||||| ||||||||||||||||||| |||||||| |||||||||||||| 
Sbjct  603  TCAATGGTGAATCAGGTCTTTGATGGAGAAATGCTTAGGATGACGTTAACTCGGCCTCAA  662

Query  361  AACCGAAATGCGCAACACATGAGAGT-GACATCAATTGTTCCTCTAAGATCAGGATTTCG  419
            |||||||| ||||||||||||||||| | | ||| ||||||||||| |||||||| ||| 
Sbjct  663  AACCGAAACGCGCAACACATGAGAGTCG-CTTCAGTTGTTCCTCTACGATCAGGAGTTCA  721

Query  420  GCCAGCAATTGTAACTTTGACACATATTTGCTCAAAGAATGCTTCTTTAGGGAATTGTTC  479
            ||| ||||||||||| |||| ||| |||||| |||||||||||||||||||||||| |||
Sbjct  722  GCCTGCAATTGTAACCTTGAGACAGATTTGCACAAAGAATGCTTCTTTAGGGAATTTTTC  781

Query  480  TACAACAAATCACAGCTCCTAA  501
            ||||||||||||||| ||||||
Sbjct  782  TACAACAAATCACAGTTCCTAA  803



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23911453972


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5