BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900529
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06740.1 | Symbols: | Concanavalin A-like lectin protein ki... 2109 0.0
> AT5G06740.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:2084094-2086052 FORWARD LENGTH=1959
Length=1959
Score = 2109 bits (1142), Expect = 0.0
Identities = 1718/1988 (86%), Gaps = 71/1988 (4%)
Strand=Plus/Plus
Query 1 ATGAAATATTCTCCTGCGTGCAAGCTCCTGTTCTTGATTCTAACTATAACTTGTAAGATC 60
|||| || ||||| |||||| |||||||||||||||| | || ||||||||||||||
Sbjct 1 ATGAGATTTTCTCTTGCGTGGAAGCTCCTGTTCTTGA---T-AC--TAACTTGTAAGATC 54
Query 61 GAAACACAAGTGAAGTGCATGAAGTTCAATTTCTCTAAGTTTAACG-GTG-ATTCGAACT 118
|| ||||||||||||||| | |||||| ||||| || |||||| | | | | | |||||
Sbjct 55 GAGACACAAGTGAAGTGCTTAAAGTTCGATTTCCCTGGGTTTAATGTGAGCAAT-GAACT 113
Query 119 TG---T-AT-CTAAACT-ACTCCGACATTGCT-TTTGAAGCACTCCAAGTGACTCCTGAA 171
| | || | | | | |||| |||||| | |||| |||| ||||||||||||||||
Sbjct 114 GGAATTGATCCGAGA-TAACTCATACATTG-TCTTTGGAGCAATCCAAGTGACTCCTGAT 171
Query 172 G---CTCGTGG---TGCT--C-CTATCACGAACCTCTC-GG--GACGCACGGTCTACAAG 219
| || |||| || | | ||||| | |||| | || || |||| |||||||
Sbjct 172 GTTACTGGTGGACCTGGTGGCACTATCGCAAACCAAGCAGGCAGA-GCAC--TCTACAAA 228
Query 220 GA-CCGTTTCAGGCTATGGAGAAAAGGCAAGAAAT-CTACTTTTAACACCACTTTCGTTA 277
| || ||||||||||||||| ||| |||| | | ||||||| ||||||||||||||||
Sbjct 229 AAGCC-TTTCAGGCTATGGAGCAAACACAAG-AGTGCTACTTTCAACACCACTTTCGTTA 286
Query 278 TTAACATCAAGAACCAAACCGAAT-TTGGAGGCGAAGGCTTAGCCTTT-GTTCTCACACC 335
|||||||| ||| |||||| || |||||||||||||||| |||| |||||||||||
Sbjct 287 TTAACATCTCTAACAAAACCG-ATCCCGGAGGCGAAGGCTTAG-CTTTCGTTCTCACACC 344
Query 336 TGAGAAGAAC-GTTCCTCAAAACAGCTCGGGTATGTGGCTCGGCT-TGATGAACGAAAGG 393
||| || || | |||||| |||||||| |||||||||||||| | || | ||||||||
Sbjct 345 CGAGGAG-ACTGCTCCTCAGAACAGCTCAGGTATGTGGCTCGG-TATGGTCAACGAAAGA 402
Query 394 ACAAATGGGACTCGCGAGTCGAGGATTGTTGCGGTTGAGTTCGACACAAGGAAGAGCCAT 453
|||||| ||| | ||||||||||| ||| ||||||||||||||||||||||||| |||
Sbjct 403 ACAAATAGGAATAATGAGTCGAGGATCGTTTCGGTTGAGTTCGACACAAGGAAGAGTCAT 462
Query 454 CCTGATGATCTTGATGGAAACCATGTGGGTCTAAATGTGAACAACATAAATTCGGTTGTT 513
| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 463 TCGGATGATCTTGATGGAAACCATGTGGCTCTAAATGTGAACAACATCAATTCGGTTGTT 522
Query 514 CAAGAATCGTTGAGCAGTCGAGGGATCACGATCAATTCCAGTA-TTGATTTTACCGCACA 572
|||||||| |||||| |||||||||||| |||| ||||| | | |||| || ||||||||
Sbjct 523 CAAGAATCCTTGAGCGGTCGAGGGATCAAGATCGATTCC-GGACTTGACTTAACCGCACA 581
Query 573 TGTACGGTATGATGGTAAGAATCTTTCGGTATATGTCTCAAGAAACCTGGAGGTACATGA 632
||| |||||||||||||||||||| ||||| ||||||||||||||| |||| || |||
Sbjct 582 TGTGCGGTATGATGGTAAGAATCTATCGGTTTATGTCTCAAGAAACTTGGATGTGTTTGA 641
Query 633 TCAGCGAAACTTGGTGTTTTCTTGGCCTATAGATCTATCAGCCTATCTTCCAGAGA-ATG 691
||| | ||||| ||||||||| || |||||||||| |||||||||||||| |||| | |
Sbjct 642 ACAGAGGAACTTAGTGTTTTCTAGGGCTATAGATCTCTCAGCCTATCTTCCGGAGACA-G 700
Query 692 TTTACATTGGATTTACGGCTTCAACAAGCGATTTTACGCAACTGAATTGTGTGAAATCAT 751
|||| |||||||||| |||||||||||| |||| ||| | ||||||||||||| |||||
Sbjct 701 TTTATGTTGGATTTACAGCTTCAACAAGCAATTTCACGGAGCTGAATTGTGTGAGATCAT 760
Query 752 GGAGTTTTGAAGGTTTAGAGGTCGATGGAGATCGAAATATATGGTTGTGGTCCTTGTGGA 811
||||||||||||||||| || ||||||| ||| | || | || ||| ||| | | ||||
Sbjct 761 GGAGTTTTGAAGGTTTAAAGATCGATGGCGAT-GGAA-ACAT-GTTATGG--C-TCTGGA 814
Query 812 TCATTACCCCTACT-GTGTGTGCTGTT-GTAATAGGAGCTTTCTTATGTGGACTATACTT 869
||| || ||||| | |||| | |||| || ||||||||||||||| | | | | |||||
Sbjct 815 TCACTATCCCTA-TAGTGTTTATTGTTGGT-ATAGGAGCTTTCTTAGGAGCATTGTACTT 872
Query 870 AAGATCTAGGTCAAAGGCCGGGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTG 929
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 873 GAGATCTAGGTCAAAGGCAGGGGAAACAAATCCGGATATAGAAGCTGAGCTAGATAATTG 932
Query 930 CGGTGCACACCCGCAGAAGTTCAAGCTAAGAGAGCTGAAGAGAGCAACGGGAAACTTCAG 989
|| |||| | ||||||||||||||||| |||||||| ||||||||||| ||||||||| |
Sbjct 933 CGCTGCAAATCCGCAGAAGTTCAAGCTGAGAGAGCTAAAGAGAGCAACAGGAAACTTCGG 992
Query 990 CGTGGAGAACAAACTCGGGCAAGGCGGGTTTGGGATGGTGTTTAAGGGGAAGTGGGAGGG 1049
|| |||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 993 CGCGGAGAATAAACTAGGGCAAGGCGGGTTTGGGATGGTGTTTAAAGGGAAATGGCAGGG 1052
Query 1050 TAGAGATATAGCTGTGAAACGAGTTTCCGAGAAATCGCGTCAAGGGAAGCAAGAGTTCAT 1109
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1053 TAGAGACATAGCTGTGAAACGAGTTTCCGAGAAATCGCATCAAGGGAAGCAAGAGTTTAT 1112
Query 1110 ATCCGAGATCAAAACGATCGGTAATCTGAATCATAAGAACTTGGTGAAGTTATTGGGATG 1169
| ||||||||| ||| || |||||||||||||||| |||| |||||||||||||||||||
Sbjct 1113 AGCCGAGATCACAACTATTGGTAATCTGAATCATAGGAACCTGGTGAAGTTATTGGGATG 1172
Query 1170 GTGCTACGAGAGAAAGGAGTTTCTTCTGGTTTACGAGTACATGCCGAACGGAAGCTTGGA 1229
|||||||||||| ||||||| |||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1173 GTGCTACGAGAGGAAGGAGTATCTTCTGGTTTATGAGTATATGCCTAACGGAAGCTTGGA 1232
Query 1230 CAGATATGTTTTCGTGGAAGACAAGTCAAGTTCAAACCTAAAATGGGAGACAAGGAA-AC 1288
|| |||| ||||| |||||||||||||||| |||||||||| ||||||||||||||| |
Sbjct 1233 CAAATATCTTTTCTTGGAAGACAAGTCAAGATCAAACCTAACATGGGAGACAAGGAAGA- 1291
Query 1289 ACATTATAAGAGGGATATCTCAAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGA 1348
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 ACATTATAACAGGGCTATCTCAAGCTTTGGAGTATCTTCACAATGGATGTGAGAAGAGGA 1351
Query 1349 TACTTCATAGAGACATAAAAGCAAGCAACGTAATGCTGGACTCGGATTTCAACGCAAAGC 1408
||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1352 TACTTCACAGAGACATAAAAGCAAGCAACGTAATGCTGGACTCCGACTTCAACGCAAAGC 1411
Query 1409 TTGGCGATTTCGGGCTTGCGAGGATGATTCAGCAAAGCGAAATGACACACCATTCGACAA 1468
| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1412 TCGGCGACTTCGGGCTTGCGAGGATGATTCAGCAAAGCGAAATGACACATCATTCGACCA 1471
Query 1469 ATGAGATTGCTGGAACACCGGGATACATGGCTCCCGAGACTTTTCTCAACGGGAGAGCTA 1528
| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1472 AGGAGATCGCTGGAACACCGGGATACATGGCTCCTGAGACTTTTCTCAACGGGAGAGCCA 1531
Query 1529 CGGTTGAAACGGATGTGTATGCATTCGGAGTTCTAATGCTCGAAGTAGTCTCCGGGAAGA 1588
| |||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||
Sbjct 1532 CAGTTGAAACAGATGTGTATGCGTTCGGAGTTCTAATGCTTGAAGTAGTCTCGGGGAAGA 1591
Query 1589 AACTGAGTTATGTCTTGGT-AAAGGAGAACGAGAGCAATTACAAGAATAGCATTGTGAAT 1647
||| || ||||||||||| |||| | ||| ||| ||||||||| |||||||||||||||
Sbjct 1592 AACCAAGCTATGTCTTGGTCAAAG-ACAACCAGAACAATTACAACAATAGCATTGTGAAT 1650
Query 1648 TGGCTATGGGAGCTATACAGAAATGGAACCATAATGGATGCTGCGGATCCAAGAATGGGA 1707
|||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||||||
Sbjct 1651 TGGCTATGGGAGCTATACAGAAATGGAACCATCACGGATGCTGCCGATCCGGGAATGGGA 1710
Query 1708 AGTTTGTTTGATGAAGAAGAGATGAAAAGCGTTTTGCTCTTAGGACTCGCTTGTTGCCAC 1767
| |||||| ||| ||||||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1711 AATTTGTTCGATAAAGAAGAAATGAAAAGCGTTTTGCTCTTAGGACTAGCTTGCTGCCAC 1770
Query 1768 CCAAATCCGAACCTAAGACCTTCCATGAAAACTGTTTTGAAGGTCTTGACGGGTGAAACT 1827
|| |||||||||| |||||| ||||||||||| || |||||||||||||||||||| |||
Sbjct 1771 CCGAATCCGAACCAAAGACCGTCCATGAAAACAGTGTTGAAGGTCTTGACGGGTGAGACT 1830
Query 1828 AGCCCACCCGATGTGCCTACAGAGAGACCGGCTTTCGTATGGCCAGTAATGCCTCCATCT 1887
|||||||| ||||| |||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1831 AGCCCACCGGATGTTCCTACAGAGAGACCAGCTTTCGTGTGGCCAGCGATGCCTCCATCT 1890
Query 1888 TTTGGTGTTGTTGACTACTCTCTTACAGGGAGCCAGGA-CA-TT-AC---CG-AGCTTAC 1940
|| ||| |||||||||||||||||||||| ||| | || || || || |||||||
Sbjct 1891 TTCAGTGACATTGACTACTCTCTTACAGGGAGTCAG-ATCAATTCACTTACGGAGCTTAC 1949
Query 1941 TGGCCGAT 1948
|||| |||
Sbjct 1950 TGGCAGAT 1957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96585848580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5