BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900541
Length=705
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27940.1 | Symbols: | RING/U-box superfamily protein | chr2... 946 0.0
> AT2G27940.1 | Symbols: | RING/U-box superfamily protein | chr2:11897942-11898867
FORWARD LENGTH=860
Length=860
Score = 946 bits (512), Expect = 0.0
Identities = 645/706 (91%), Gaps = 21/706 (3%)
Strand=Plus/Plus
Query 18 GCACCTCCGCAAGCTTCTCCAGCTCTACCAAGCTTGTAGTGGCGAACAAGAGCTCATAAC 77
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 33 GCACCTACGCAAGCTTCTCCAGCTCTACCAAGCTTGTGGTGGCGAACAAGAGCTCACAA- 91
Query 78 AAA-CGTCCAAAACG-C-CA-CAT---CATT-A--CCAACGCCACCACCAGAACCACCTT 127
||| ||||||||||| | || ||| |||| | ||||||||||||||| | |||||||
Sbjct 92 AAACCGTCCAAAACGTCACATCATCACCATTGACTCCAACGCCACCACCACAGCCACCTT 151
Query 128 CTGCGTTAGACTCCTCCATGGCTCTAACCATCTTTGTCCTCTTGGTTGCTCTCTTCTTCA 187
| || ||||||||| | |||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 152 CGGCATTAGACTCCACTATGGCTCTCACCATCTTTATCCTCTTGGTTGCTCTCTTCTTCA 211
Query 188 TGGGTTTCTTCTCCGTTTACATT-CACCACTTCGTAG--A--T-GA-TTCAACGGTTGAG 240
|||||||||| || |||||| || | |||||||| || | | | ||||||||||||
Sbjct 212 TGGGTTTCTTTTCAGTTTAC-TTCCGCCACTTCGCAGACAGTTCAAGTTCAACGGTTGAT 270
Query 241 ATTTCTTCCATACCAAGAACAAGATCCTCTAGGATGTCTCCACGTCGCCTTTCCACCTCC 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 271 ATTTCTTCCATGCCAAGAACAAGATCCTCTAGGATGTCTCCACGTCGCCTTTCCACATCC 330
Query 301 GTCGTTGTCTCACGGCCGTATAGTTACCGGAGGGGACTTGATTCTCAGACCGTTCGATCT 360
||||| || |||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 331 GTCGTCGTATCACGGCCGTATAGTTTCCGGAGGGGTCTTGATTCTCAGGCCGTTCGATCT 390
Query 361 CTGCCAGTGTACCATTACACGAAAGCCA-CGAAGCAGCGGAACGAAGATTGCGTTATCTG 419
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 391 CTGCCAGTGTACCGTTACACGAAAG-CAGCGAAGCAGCGGAACGAAGATTGCGTTATCTG 449
Query 420 CTTGAGTGAATTCGAAGAAGGTGAAACAGTTAAAGTGATACCACACTGTGGTCACGTGTT 479
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 450 CTTGAGCGATTTCGAAGAAGGTGAAACAGTTAAAGTGATACCACATTGTGGTCACGTGTT 509
Query 480 CCACGTGGATTGCGTTGACACGTGGCTGAGCTCATACGTAACATGTCCCTTGTGCCGGAG 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 CCACGTAGATTGCGTTGACACGTGGCTGAGCTCATACGTAACATGTCCCTTGTGCCGGAG 569
Query 540 CAACCAGCTGTTCTCGGATAAGGACTTGGGCATGCAAGAACCGCCTGATCAGGGCTCGTC 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 570 TAACCAGCTGTTCTCGGATAAGGACTTGGGCATGCAAGAACCGCCTGATCAGGACTCGGC 629
Query 600 AGAAGAACATGACACGTGTGATGTTGTGGACCCTTGTGTCAGAAGGTGTAGTAGCTGTTC 659
||||||||||||||||||||||| ||||||| ||||||| || |||||||||||||||||
Sbjct 630 AGAAGAACATGACACGTGTGATGGTGTGGACACTTGTGTAAGGAGGTGTAGTAGCTGTTC 689
Query 660 GAGTTTGGGGCAGAGGACTGGATTGGAACGGTCGTTGAGTCTCTGA 705
||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 690 AAGTTTGGGGCAGAGGACTGGATTGGAACGATCGCTGAGCCTCTGA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34159219960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5