BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900542

Length=330
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28480.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain ...   159    1e-38


> AT2G28480.1 | Symbols:  | RNA-binding CRS1 / YhbY (CRM) domain 
protein | chr2:12176484-12178422 REVERSE LENGTH=1489
Length=1489

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 94/98 (96%), Gaps = 0/98 (0%)
 Strand=Plus/Plus

Query  1    ATGCAGCTAATAGGAAAGACCCGCGGCGACTTACTGTTAAAGGAAAGAAGAAAAAGTTTG  60
            ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct  517  ATGCAGCTAATAGGAAAGACCCGAGGCGACTTACTGTTAAAGGGAAGAAGAAGAAGTTTG  576

Query  61   TTAATGCAGAGGAAAGAATCAAGTACAAGCTTGAAAAG  98
            ||||||||||||||||||||||||| ||||||||||||
Sbjct  577  TTAATGCAGAGGAAAGAATCAAGTATAAGCTTGAAAAG  614



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15381931194


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5