BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900543

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27930.1 | Symbols:  | PLATZ transcription factor family pro...   518    2e-146


> AT2G27930.1 | Symbols:  | PLATZ transcription factor family protein 
| chr2:11892369-11893488 FORWARD LENGTH=570
Length=570

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 306/319 (96%), Gaps = 0/319 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGGAGCCAAAATGGCTGGAAGGTCTCTTGAGAACAAACTTCTTCAGCATTTGCCCT  60
            ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct  1    ATGGAGGAGCCGAAATGGCTCGAAGGTCTCTTAAGAACAAACTTCTTCAGCATTTGCCCT  60

Query  61   CAACACCGTGAGACACCGCGAAATGAGTGCAACATGTTCTGTCTCTCCTGTCAAAACGCT  120
            | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CGACATCGCGAGACACCGCGAAATGAGTGCAACATGTTCTGTCTCTCCTGTCAAAACGCT  120

Query  121  GCGTTTTGCTTCTACTGCCGCTCCTCCTTTCACATTGACCATCCCGTTCTTCAGATAAGA  180
            |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct  121  GCGTTTTGCTTCTACTGCCGCTCCTCCTTTCACATTGATCATCCCGTCCTTCAGATAAGA  180

Query  181  AGATCTTCATATCATGATGTGGTGAGAGTGTCGGAGATAGAGAAGGCATTGGACATAAGA  240
            ||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  181  AGATCGTCGTATCATGATGTGGTGAGAGTATCGGAGATAGAGAATGCATTGGACATAAGA  240

Query  241  GGAGTGCAAACTTATGTCATCAACAGCGCGAGGGTTCTCTTCTTAAACGAGAGACCTCAG  300
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  241  GGAGTGCAAACTTATGTCATCAATAGCGCGAGGGTTCTCTTCTTAAACGAGAGACCTCAG  300

Query  301  CCTAAGAACTCCTCCCATG  319
            |||||||||||||||||||
Sbjct  301  CCTAAGAACTCCTCCCATG  319


 Score = 87.9 bits (47),  Expect = 6e-17
 Identities = 47/47 (100%), Gaps = 0/47 (0%)
 Strand=Plus/Plus

Query  319  GAACCCTTCTTGATCCCTTTCGCTTCTGTTCCTTGGGTTGCAAGGTT  365
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  374  GAACCCTTCTTGATCCCTTTCGCTTCTGTTCCTTGGGTTGCAAGGTT  420



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5