BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900551

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-...   220    7e-57
  AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:237428...   202    2e-51


> AT2G41740.1 | Symbols: VLN2, ATVLN2 | villin 2 | chr2:17410715-17417740 
REVERSE LENGTH=3541
Length=3541

 Score =  220 bits (119),  Expect = 7e-57
 Identities = 149/163 (91%), Gaps = 4/163 (2%)
 Strand=Plus/Plus

Query  234   AGGCTTGTC-TCCTAATGTTCCACTCTACAAAATGAATGAAGGGAACGAGCCATGCTTCT  292
             ||||||| | |||||| || ||| |||||||||| |||||||||||||| ||||||||||
Sbjct  2436  AGGCTTG-CATCCTAAAGTCCCAATCTACAAAATCAATGAAGGGAACGAACCATGCTTCT  2494

Query  293   TCACCACTTACTTTTGTTGGGATCCCACTAAAGCAATCGCACAAGGAAACTCATTCCAGA  352
             ||||||||||||||| ||||||| |||||||||| |||| ||||||||| ||||||||||
Sbjct  2495  TCACCACTTACTTTTCTTGGGATGCCACTAAAGCTATCGTACAAGGAAATTCATTCCAGA  2554

Query  353   AAAAGGCAGT-GTTGTTATTTGGCACTCACCACGTTGTGGAGG  394
             |||||||| | ||||||||||||||||||||||||||||||||
Sbjct  2555  AAAAGGCA-TCGTTGTTATTTGGCACTCACCACGTTGTGGAGG  2596


> AT1G63990.1 | Symbols: SPO11-2 | sporulation 11-2 | chr1:23742842-23745374 
REVERSE LENGTH=1656
Length=1656

 Score =  202 bits (109),  Expect = 2e-51
 Identities = 131/142 (92%), Gaps = 0/142 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGTTCTTCTCCGATCAAAACCTCTCTTACGCTGATATTCTTCTCCCTCACGAAGCT  60
            ||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||
Sbjct  51   ATGAAGTTCTTCTCCGATCAACACCTCTCTTACGCTGACATTCTTCTTCCTCACGAAGCT  110

Query  61   CGTGCTAGAATCGAAGTCTCTGTTCTCAATCTCCTTAGAATTTTAAATTCCCCTGATCCA  120
            ||||||||||||||||| |||||||||||||||||  ||||||| || ||||| ||||||
Sbjct  111  CGTGCTAGAATCGAAGTTTCTGTTCTCAATCTCCTCCGAATTTTGAACTCCCCAGATCCA  170

Query  121  GCTATCTCTGATCTCTCCCTGA  142
            |||||||| |||||||| ||||
Sbjct  171  GCTATCTCCGATCTCTCTCTGA  192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5