BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900563
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27760.1 | Symbols: ATIPT2, IPPT, IPT2 | tRNAisopentenyltran... 2026 0.0
> AT2G27760.1 | Symbols: ATIPT2, IPPT, IPT2 | tRNAisopentenyltransferase
2 | chr2:11824798-11827591 FORWARD LENGTH=1622
Length=1622
Score = 2026 bits (1097), Expect = 0.0
Identities = 1306/1407 (93%), Gaps = 14/1407 (1%)
Strand=Plus/Plus
Query 1 ATGATGTTGTTAAACCCTAGCAATGGCGGAATCGAGgaagagaagaagaagaagaagaag 60
|||||| |||||||||||||||||||||||||||| | | | || |||||| |||||||
Sbjct 63 ATGATGATGTTAAACCCTAGCAATGGCGGAATCGA-G--G-G-AG-AGAAGATGAAGAAG 116
Query 61 aagGCGAAGGTGGTTGTGATAATGGGTCCAACAGGTTCTGGGAAATCAAAGCTTGCCGTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAGGCGAAGGTGGTTGTGATAATGGGTCCAACAGGTTCTGGGAAATCAAAGCTTGCCGTT 176
Query 121 GATTTGTCGTCTCACTTTCCGGTGGAGATTATTAACGCCGACGCAATGCAGATTTACTCT 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 177 GATTTGGCGTCTCACTTTCCGGTGGAGATTATTAACGCCGACGCAATGCAGATATACTCT 236
Query 181 GGTCTCGATGTTCTCACCAATAAAATCACCATCAATGAACAAAACGGAGTGCCTCATCAT 240
|||||||| ||||||||||||||| ||||| || |||||||||| |||||||||||||||
Sbjct 237 GGTCTCGACGTTCTCACCAATAAAGTCACCGTCGATGAACAAAAAGGAGTGCCTCATCAT 296
Query 241 TTACTTGGGTCCGTGAGTC-CAGATATGGAGTTCACAGCTAAGGATTTTCGAGACGTAAC 299
||||||||| | ||||| | ||||||||||||||||||||| ||||||||||||| | ||
Sbjct 297 TTACTTGGGACGGTGAG-CTCAGATATGGAGTTCACAGCTAGGGATTTTCGAGACTTCAC 355
Query 300 CATTCCTCTTATTGAGGAGATCGTTTCTCGCAATCACATTCCAGTTCTTGTTGGAGGAAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGTTCCTCTTATTGAGGAGATCGTTTCTCGCAATCACATTCCAGTTCTTGTTGGAGGAAC 415
Query 360 ACATTATTATATACAGGCTGTTGTAAGTAAATTTCTTCTAGATGATTCGGCAGAAAATAC 419
||||||||||||||||||||||||||||||||||||||| || ||| | ||||| ||||
Sbjct 416 ACATTATTATATACAGGCTGTTGTAAGTAAATTTCTTCTTGACGATGCAGCAGAGGATAC 475
Query 420 TGAGGACTGCTGTTCAAATGTTGCTTCAGTGGTTAACCAAGACATGGATGTTGAGTCTGT 479
||||| || ||| || ||||||||||||||||| |||| ||||||| ||||||||||||
Sbjct 476 CGAGGAGTGTTGTGCAGATGTTGCTTCAGTGGTTGACCAGGACATGGTTGTTGAGTCTGT 535
Query 480 CTCTGGGAGAGATGATTTGAGCCATGGCTATGACCTTCTTAAAGAGCTTGATCCTGTGGC 539
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 536 CTTTGGGAGAGATGATTTGAGCCATGGCTATGAACTTCTTAAAGAGCTTGATCCTGTGGC 595
Query 540 AGCAAACAGAATTCACCCTAATAATCAAAGAAAGATTAATCAATACCTGAGCTTGCATGC 599
||| |||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||
Sbjct 596 AGCTAACAGAATTCACCCCAATAATCACAGAAAAATTAATCAATACCTTAGCTTGCATGC 655
Query 600 TAGTAGAGGAGTTCTTCCAAGCAAGCTATATCAGGGAAAGACTGCAGAGAACTGGGGCTG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TAGTAGAGGAGTTCTTCCAAGCAAGCTATATCAGGGAAAGACTGCAGAGAACTGGGGCTG 715
Query 660 CATCGATGCATCTCGTTTTGATTACTGTTTGATATGCATGGACGCTGAAACCGCAGTACT 719
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 716 CATCAATGCATCTCGTTTTGATTACTGTTTGATATGCATGGACGCTGAAACTGCAGTACT 775
Query 720 GGACAGATATGTTGAACAAAGAGTAGATTCTATGGTAGATGCTGGACTACTTGATGAAGT 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 776 GGACAGATATGTTGAACAAAGAGTAGATGCTATGGTAGATGCTGGACTACTTGATGAAGT 835
Query 780 ATATGACATCTACAAACCAGGAGCCGACTATACTAGAGGCCTAAGGCAATCCATAGGTGT 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATATGACATCTACAAACCAGGAGCCGACTATACTAGAGGCCTAAGGCAATCCATAGGTGT 895
Query 840 CAGAGAGTTTGAAGATTTCCTGAAATTGA-ATCTCTTGGAGAGAGGTGTTGGTCAGTTAA 898
||||||||||||||||||||||||| | | |||||| ||||| | ||| |||||| ||||
Sbjct 896 CAGAGAGTTTGAAGATTTCCTGAAAAT-ACATCTCTCGGAGACATGTGCTGGTCATTTAA 954
Query 899 CAAGCTCAAGCAACAATGATAAGGTTATGAAGGAGAATCTGAGAAAGATTCTGAATTTTC 958
|||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 955 CAAGCTTAAGTAACGATGATAAGGTTATGAAGGAGAATCTGAGGAAGATTCTGAATTTTC 1014
Query 959 GGAAAGATGATAAGTTGAAGATTATGTTAGAGGAAGCAATTGATAAGGTGAAGTTAAATA 1018
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1015 CAAAAGATGATAAGTTGAGGATTATGTTAGAGGAAGCAATTGATAGGGTGAAGTTAAATA 1074
Query 1019 CCAGAAGGCTCCTTCGTCGTCAAAAAAGGAGAGTTAGTCGGCTAGAAACGGTCTTTGGCT 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 CCAGAAGGCTCCTTCGTCGTCAAAAAAGGAGAGTTAGTCGGCTAGAAACGGTCTTTGGCT 1134
Query 1079 GGAATATCCATTACATTGATGCAACAGAGTACATATTAAGCAAATCTGAAGAATCATGGG 1138
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGAATATTCATTACATTGATGCAACAGAGTACATATTAAGCAAATCTGAAGAATCATGGA 1194
Query 1139 ATGCGCAAGTGGTTAAACCCGCGTCAGAGATCCTCAAGCGTTTCCTG-ATGACAGAAACT 1197
||||||||||||||||||| || ||||||||| ||| | |||||||| | |||||||||
Sbjct 1195 ATGCGCAAGTGGTTAAACCTGCTTCAGAGATCATCAGGTGTTTCCTGGA-GACAGAAACC 1253
Query 1198 GATACCGG-TCATGATTTAACCTCCGGAAAGTCCATTGAAAGAGATTTATGGAGTCAATA 1256
|| | ||| || ||| ||| || ||||||||||||||||||||| |||||| ||||||
Sbjct 1254 GA-ATCGGGTCGGGATCCAACTTCAGGAAAGTCCATTGAAAGAGATCTATGGACTCAATA 1312
Query 1257 TGTTTGTGAGGCTTGTGGAAACAAGGTACTAAGAGGAAAACACGAATGGGAACAACACAA 1316
|||||| |||||||||||||||||| |||||||||||| |||||| |||||||| |||||
Sbjct 1313 TGTTTGCGAGGCTTGTGGAAACAAGATACTAAGAGGAAGACACGAGTGGGAACATCACAA 1372
Query 1317 ACAAGGCCGTACGCATCGTAAGAGAGCCAGTCGACTCAAAAGGGCCCAAACTTTTAAAAA 1376
||||||||||||||||||||||||| ||| ||||| ||||| ||||||||| |||||
Sbjct 1373 ACAAGGCCGTACGCATCGTAAGAGAACCACTCGACACAAAAACTCCCAAACTTACAAAAA 1432
Query 1377 CAGAGAAGTGCAAGAAGCAGAACTAAA 1403
||||||||| |||||||||||| ||||
Sbjct 1433 CAGAGAAGTTCAAGAAGCAGAAGTAAA 1459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69628155915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5