BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900567
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27710.1 | Symbols: | 60S acidic ribosomal protein family |... 424 4e-118
AT2G27720.2 | Symbols: | 60S acidic ribosomal protein family |... 339 1e-92
> AT2G27710.1 | Symbols: | 60S acidic ribosomal protein family
| chr2:11816634-11817867 FORWARD LENGTH=755
Length=755
Score = 424 bits (229), Expect = 4e-118
Identities = 310/348 (89%), Gaps = 9/348 (3%)
Strand=Plus/Plus
Query 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTATTGAGCGGGAAAGCTTCCCCAACTAGT 60
||||||||||| || || | |||||||| || |||||||| |||||||| ||||| |||
Sbjct 211 ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT 270
Query 61 GGCAATATCAAGACTATTCTTGAATCAGTTGGTGCTGAGACGGAGGATTCTCAGATTGAG 120
| | ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||
Sbjct 271 GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG 330
Query 121 CTTTTGTTGAAGGAAGTGAAAGGGAAAGACTTGGCTGAGGTAATTGCTTCTGGAAGGGAG 180
||||||||||||||||||||||| ||||| ||||||||| | |||||| |||||||||||
Sbjct 331 CTTTTGTTGAAGGAAGTGAAAGGAAAAGATTTGGCTGAGTTGATTGCTGCTGGAAGGGAG 390
Query 181 AAGTTAGCTTCAGTGCCGTctggtggtggtggtggtgttgcggttgcttctgctccatct 240
|||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||
Sbjct 391 AAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTGCTACATCT 450
Query 241 gc---tgg------tggtggtgctcctgctgctgAGTCCaagaaagaagagaagaaggaa 291
| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 451 GGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAGGAA 510
Query 292 gagaaggaagaGTCCGACGATGACATGGGTTTCAGTCTTTTCGAGTAA 339
|| |||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 511 GAAAAGGAAGAATCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 558
> AT2G27720.2 | Symbols: | 60S acidic ribosomal protein family
| chr2:11818696-11819578 FORWARD LENGTH=601
Length=601
Score = 339 bits (183), Expect = 1e-92
Identities = 237/261 (91%), Gaps = 11/261 (4%)
Strand=Plus/Plus
Query 89 TTGGTGCTGAGACGGAGGATTCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAG 148
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 TTGGTGCTGAGACAGAGGATTCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAG 193
Query 149 ACTTGGCTGAGGTAATTGCTTCTGGAAGGGAGAAGTTAGCTTCAGTGCCGTctggtggtg 208
||||||||||| |||||||| ||||||||||||||||||||||||| || || || ||||
Sbjct 194 ACTTGGCTGAGCTAATTGCTGCTGGAAGGGAGAAGTTAGCTTCAGTACCATCAGGAGGTG 253
Query 209 gtggtggtgttgcggttgcttctgctccatctgc---tgg------tggtggtgctcctg 259
|||||||||||||||||||||||||| |||||| ||| ||||||||||||||
Sbjct 254 GTGGTGGTGTTGCGGTTGCTTCTGCTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTG 313
Query 260 ctgctgAGTCCaagaaagaagagaagaaggaagagaaggaagaGTCCGACGATGACATGG 319
|||||||||||||||||||||||||||| |||||||| ||||| ||||| ||||||||||
Sbjct 314 CTGCTGAGTCCAAGAAAGAAGAGAAGAAAGAAGAGAAAGAAGAATCCGATGATGACATGG 373
Query 320 GTTTCAGTCTT-TTCGAGTAA 339
|||||||| || |||||||||
Sbjct 374 GTTTCAGT-TTGTTCGAGTAA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5