BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg900568 Length=345 Score E Sequences producing significant alignments: (Bits) Value AT2G27710.1 | Symbols: | 60S acidic ribosomal protein family |... 479 8e-135 AT2G27720.2 | Symbols: | 60S acidic ribosomal protein family |... 377 3e-104 > AT2G27710.1 | Symbols: | 60S acidic ribosomal protein family | chr2:11816634-11817867 FORWARD LENGTH=755 Length=755 Score = 479 bits (259), Expect = 8e-135 Identities = 320/349 (92%), Gaps = 5/349 (1%) Strand=Plus/Plus Query 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTCTTGAGCGGGAAAGCTTCCCCAAGTAGT 60 ||||||||||| || || | |||||||| || |||||||| |||||||| |||| ||| Sbjct 211 ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT 270 Query 61 GGCGATATCAAGACTATTCTTGGATCAGTTGGTGCTGAGTCAGATGATGCTCAGATTGAG 120 | ||||||||||||||| ||||||||||||||||||||| |||| ||| ||||||||||| Sbjct 271 GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG 330 Query 121 CTTTTGTTGAAGGAAGTGAAAGGGAAAGATTTGGCTGAGGTT-ATTGCTTCTGGAAGGGA 179 ||||||||||||||||||||||| |||||||||||||| ||| |||||| |||||||||| Sbjct 331 CTTTTGTTGAAGGAAGTGAAAGGAAAAGATTTGGCTGA-GTTGATTGCTGCTGGAAGGGA 389 Query 180 GAAGTTAGCTTCAGTGCCGTCtggtggtggtggtggtgttgcggttgcttctgctccatc 239 ||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| Sbjct 390 GAAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTGCTACATC 449 Query 240 t---ggtggaggaggtggtggtgcTCCTGCTGCTGAGTCCaagaaagaagagaagaaaga 296 | ||||||||||||||||||||| ||||||||||||||||||||||||||||||| || Sbjct 450 TGGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAGGA 509 Query 297 agagaaggaagaaTCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 345 ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 510 AGAAAAGGAAGAATCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 558 > AT2G27720.2 | Symbols: | 60S acidic ribosomal protein family | chr2:11818696-11819578 FORWARD LENGTH=601 Length=601 Score = 377 bits (204), Expect = 3e-104 Identities = 242/260 (93%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 89 TTGGTGCTGAGTCAGATGATGCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAG 148 ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 134 TTGGTGCTGAGACAGAGGATTCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAG 193 Query 149 ATTTGGCTGAGGTTATTGCTTCTGGAAGGGAGAAGTTAGCTTCAGTGCCGTCtggtggtg 208 | ||||||||| | |||||| ||||||||||||||||||||||||| || || || |||| Sbjct 194 ACTTGGCTGAGCTAATTGCTGCTGGAAGGGAGAAGTTAGCTTCAGTACCATCAGGAGGTG 253 Query 209 gtggtggtgttgcggttgcttctgctccatct---ggtggaggaggtggtggtgcTCCTG 265 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 254 GTGGTGGTGTTGCGGTTGCTTCTGCTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTG 313 Query 266 CTGCTGAGTCCaagaaagaagagaagaaagaagagaaggaagaaTCCGATGATGACATGG 325 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 314 CTGCTGAGTCCAAGAAAGAAGAGAAGAAAGAAGAGAAAGAAGAATCCGATGATGACATGG 373 Query 326 GTTTCAGTCTATTCGAGTAA 345 |||||||| | ||||||||| Sbjct 374 GTTTCAGTTTGTTCGAGTAA 393 Score = 124 bits (67), Expect = 4e-28 Identities = 82/89 (92%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTCTTGAGCGGGAAAGCTTCCCCAAGTAGT 60 ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | | Sbjct 1 ATGAAGGTTGTTGCTGCGTTTTTGCTTGCCGTCTTGAGCGGGAAAGCTTCCCCAACCACT 60 Query 61 GGCGATATCAAG-ACTATTCTTGGATCAG 88 |||||||||||| | |||||||||||||| Sbjct 61 GGCGATATCAAGGA-TATTCTTGGATCAG 88 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16135947429 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5