BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900568
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27710.1 | Symbols: | 60S acidic ribosomal protein family |... 479 8e-135
AT2G27720.2 | Symbols: | 60S acidic ribosomal protein family |... 377 3e-104
> AT2G27710.1 | Symbols: | 60S acidic ribosomal protein family
| chr2:11816634-11817867 FORWARD LENGTH=755
Length=755
Score = 479 bits (259), Expect = 8e-135
Identities = 320/349 (92%), Gaps = 5/349 (1%)
Strand=Plus/Plus
Query 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTCTTGAGCGGGAAAGCTTCCCCAAGTAGT 60
||||||||||| || || | |||||||| || |||||||| |||||||| |||| |||
Sbjct 211 ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT 270
Query 61 GGCGATATCAAGACTATTCTTGGATCAGTTGGTGCTGAGTCAGATGATGCTCAGATTGAG 120
| ||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 271 GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG 330
Query 121 CTTTTGTTGAAGGAAGTGAAAGGGAAAGATTTGGCTGAGGTT-ATTGCTTCTGGAAGGGA 179
||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||
Sbjct 331 CTTTTGTTGAAGGAAGTGAAAGGAAAAGATTTGGCTGA-GTTGATTGCTGCTGGAAGGGA 389
Query 180 GAAGTTAGCTTCAGTGCCGTCtggtggtggtggtggtgttgcggttgcttctgctccatc 239
||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||
Sbjct 390 GAAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTGCTACATC 449
Query 240 t---ggtggaggaggtggtggtgcTCCTGCTGCTGAGTCCaagaaagaagagaagaaaga 296
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 450 TGGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCAAGAAAGAAGAGAAGAAGGA 509
Query 297 agagaaggaagaaTCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 345
||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 AGAAAAGGAAGAATCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA 558
> AT2G27720.2 | Symbols: | 60S acidic ribosomal protein family
| chr2:11818696-11819578 FORWARD LENGTH=601
Length=601
Score = 377 bits (204), Expect = 3e-104
Identities = 242/260 (93%), Gaps = 3/260 (1%)
Strand=Plus/Plus
Query 89 TTGGTGCTGAGTCAGATGATGCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAG 148
||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 134 TTGGTGCTGAGACAGAGGATTCTCAGATTGAGCTTTTGTTGAAGGAAGTGAAAGGGAAAG 193
Query 149 ATTTGGCTGAGGTTATTGCTTCTGGAAGGGAGAAGTTAGCTTCAGTGCCGTCtggtggtg 208
| ||||||||| | |||||| ||||||||||||||||||||||||| || || || ||||
Sbjct 194 ACTTGGCTGAGCTAATTGCTGCTGGAAGGGAGAAGTTAGCTTCAGTACCATCAGGAGGTG 253
Query 209 gtggtggtgttgcggttgcttctgctccatct---ggtggaggaggtggtggtgcTCCTG 265
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 254 GTGGTGGTGTTGCGGTTGCTTCTGCTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTG 313
Query 266 CTGCTGAGTCCaagaaagaagagaagaaagaagagaaggaagaaTCCGATGATGACATGG 325
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 314 CTGCTGAGTCCAAGAAAGAAGAGAAGAAAGAAGAGAAAGAAGAATCCGATGATGACATGG 373
Query 326 GTTTCAGTCTATTCGAGTAA 345
|||||||| | |||||||||
Sbjct 374 GTTTCAGTTTGTTCGAGTAA 393
Score = 124 bits (67), Expect = 4e-28
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGTTGTCGCTGCGTTTTTGCTCGCCGTCTTGAGCGGGAAAGCTTCCCCAAGTAGT 60
||||||||||| |||||||||||||| |||||||||||||||||||||||||||| | |
Sbjct 1 ATGAAGGTTGTTGCTGCGTTTTTGCTTGCCGTCTTGAGCGGGAAAGCTTCCCCAACCACT 60
Query 61 GGCGATATCAAG-ACTATTCTTGGATCAG 88
|||||||||||| | ||||||||||||||
Sbjct 61 GGCGATATCAAGGA-TATTCTTGGATCAG 88
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16135947429
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5