BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900569

Length=297
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family |...   246    7e-65
  AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family |...   235    2e-61


> AT2G27710.1 | Symbols:  | 60S acidic ribosomal protein family 
| chr2:11816634-11817867 FORWARD LENGTH=755
Length=755

 Score =  246 bits (133),  Expect = 7e-65
 Identities = 163/176 (93%), Gaps = 7/176 (4%)
 Strand=Plus/Plus

Query  129  GAA-GGAGAAGTTAGCTTCAGTGCCATCTGGT---GGTGGTGGTGTTGCGGTTGCTTCTG  184
            ||| ||||||||||||||||||||| ||||||   || ||||||||||||||||||||||
Sbjct  383  GAAGGGAGAAGTTAGCTTCAGTGCCGTCTGGTGGCGGAGGTGGTGTTGCGGTTGCTTCTG  442

Query  185  CTCCATCT---GGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCaagaaagaagaga  241
            || |||||   ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  443  CTACATCTGGAGGTGGAGGAGGTGGTGGTGCTTCTGCTGCTGAGTCCAAGAAAGAAGAGA  502

Query  242  agaaggaagagaaggaagaaTCTGATGATGACATGGGTTTCAGTCTATTCGAGTAA  297
            |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  503  AGAAGGAAGAAAAGGAAGAATCCGATGATGACATGGGTTTCAGTCTATTCGAGTAA  558


 Score =  198 bits (107),  Expect = 2e-50
 Identities = 125/134 (93%), Gaps = 0/134 (0%)
 Strand=Plus/Plus

Query  1    ATGAAGGTTGTTGCCGCGTTCTTGCTCGCTGTTTTGAGCGGAAAAGCTTCCCCAACCAGC  60
            ||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||| 
Sbjct  211  ATGAAGGTTGTTGCCGCATACTTGCTCGCTGTTTTGAGCGGAAAAGCTTCACCAACCAGT  270

Query  61   GCCGATATCAAGACTATTCTTGGATCAGTTGGTGCTGAGTCAGATGATGCTCAGATTGAG  120
            ||||||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||
Sbjct  271  GCCGATATCAAGACTATCCTTGGATCAGTTGGTGCTGAGACAGAGGATTCTCAGATTGAG  330

Query  121  CTGTTGTTGAAGGA  134
            || |||||||||||
Sbjct  331  CTTTTGTTGAAGGA  344


> AT2G27720.2 | Symbols:  | 60S acidic ribosomal protein family 
| chr2:11818696-11819578 FORWARD LENGTH=601
Length=601

 Score =  235 bits (127),  Expect = 2e-61
 Identities = 161/176 (91%), Gaps = 7/176 (4%)
 Strand=Plus/Plus

Query  129  GAA-GGAGAAGTTAGCTTCAGTGCCATC---TGGTGGTGGTGGTGTTGCGGTTGCTTCTG  184
            ||| |||||||||||||||||| |||||    ||||||||||||||||||||||||||||
Sbjct  218  GAAGGGAGAAGTTAGCTTCAGTACCATCAGGAGGTGGTGGTGGTGTTGCGGTTGCTTCTG  277

Query  185  CTCCATCT---GGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCaagaaagaagaga  241
            || |||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  278  CTACATCTGGAGGTGGAGGAGGTGGTGGTGCTCCTGCTGCTGAGTCCAAGAAAGAAGAGA  337

Query  242  agaaggaagagaaggaagaaTCTGATGATGACATGGGTTTCAGTCTATTCGAGTAA  297
            |||| |||||||| |||||||| ||||||||||||||||||||| | |||||||||
Sbjct  338  AGAAAGAAGAGAAAGAAGAATCCGATGATGACATGGGTTTCAGTTTGTTCGAGTAA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13723095477


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5