BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900571

Length=210
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70190.1 | Symbols:  | Ribosomal protein L7/L12, oligomerisa...   185    1e-46


> AT1G70190.1 | Symbols:  | Ribosomal protein L7/L12, oligomerisation;Ribosomal 
protein L7/L12, C-terminal/adaptor protein 
ClpS-like | chr1:26430543-26431578 FORWARD LENGTH=1036
Length=1036

 Score =  185 bits (100),  Expect = 1e-46
 Identities = 131/146 (90%), Gaps = 2/146 (1%)
 Strand=Plus/Plus

Query  54   TAAGGAGTTGAGGAGTTTTACTGATTTGGGTTTGAAAGAAGTTAAAGCATTGGTGGAGAA  113
            ||| ||||| ||||||||||||||||||||||||||||||| |||||| ||||| |||||
Sbjct  544  TAAAGAGTTAAGGAGTTTTACTGATTTGGGTTTGAAAGAAGCTAAAGCTTTGGTTGAGAA  603

Query  114  GACTCATGCGATTTTGAAAGCTAGATTGTCTAAAGAAGAAGATGAGAAAAT-CGTTGAGA  172
            ||||| ||| |||||||||||| | |||||||||||||||| |||||| || | ||||||
Sbjct  604  GACTCCTGCTATTTTGAAAGCTGGTTTGTCTAAAGAAGAAGGTGAGAAGATTC-TTGAGA  662

Query  173  AGTTGAAAGCTCTTGGTGTTAAAGTT  198
            |||||||||| ||||||| |||||||
Sbjct  663  AGTTGAAAGCACTTGGTGCTAAAGTT  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9406352637


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5