BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900578
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT2G27670.1 | Symbols: | Domain of unknown function DUF220 | c... 1343 0.0
AT1G23660.1 | Symbols: | Domain of unknown function DUF220 | c... 424 1e-117
AT1G23610.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 291 1e-77
AT1G23600.1 | Symbols: | Domain of unknown function DUF220 | c... 233 2e-60
> AT2G27670.1 | Symbols: | Domain of unknown function DUF220 |
chr2:11801568-11802891 REVERSE LENGTH=882
Length=882
Score = 1343 bits (727), Expect = 0.0
Identities = 833/884 (94%), Gaps = 7/884 (1%)
Strand=Plus/Plus
Query 1 ATGGTTGTATTTACTAGATTTGGTGGCTTGATCAATCAGAGCATTCAACAGCCTCTTAAG 60
|||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1 ATGGGTGGATTTACTGGATTTGGTGGCTTGATCAATCAGAACATTCAACAGCCTCGTAAG 60
Query 61 GCCGCGGCCGAGTCCAAGATACCTGAGAATGTTAAATCTAGTTCAGTTTCAGAGAAAGAT 120
||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 61 GCCGCGGCCAAGTCCAAGATACATGAGAATGTTAAATCTGGTTCAGTTTCAGAGAAAGAT 120
Query 121 ACTAATATTCAGGAACCTTGGTATTGGGATCCTGATGTGGTCCCAAAGTTGAAGGCTGAG 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 121 ACTAATATTCAGGAACCTTGGTATTGGGATCCTGATGTGGACCCAAAGTTGAAGGCCGAG 180
Query 181 TACAAG-AAAA--ATTCGCATGTGAATAGGCAAGCAGGACTTTGGTCTGGTCCTAATAAC 237
|||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 181 TACAAGAAAAACCATTCGCATGTGAATAGGCAAGCAAGACTTTGGTCTGGTCCAAATAAC 240
Query 238 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAAGaaaaaaaGGTCTTTGC 297
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 241 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAACAAAAAAGGGTCTTTGC 300
Query 298 AATATGAACATAGAATTTACATTGGGATGGCCTCCTCAATTAGTCTCTGAGATGCTTACT 357
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTTGAACATAGAATTCACATTGGGATGGCCTCCTCAATTAGTCTCTGAGATGCTTACT 360
Query 358 AATCCAAGAAACCTAAATTTCTTCAGATTATTCGACAGGGAATTTCGCCAACGTTTGGAC 417
|||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 AATCCAAGAAACATAAATTTCTTCAGATTATTCGATAGGGACTTTCGCCAACGTTTGGAC 420
Query 418 AACAAATCAACAAAGGTTTTGAAGAAAGACGGACCAAGGCAGATCACGGA-AGTGaaaaa 476
|||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||
Sbjct 421 AACAAATCAACAAAGGTTTTGAAGAAGGACGGACCGCGGCAGATCAC-GAGAGTGAAAAA 479
Query 477 aaCTTTTAGATATAAGCTTCTCGGGTTG-TCTATAGCTATCCCTATACATCTAATCATCG 535
|||||| ||||||||||| || ||| | |||||||||||||| ||||||||||||||||
Sbjct 480 AACTTTGAGATATAAGCTCCTTGGG-CGCTCTATAGCTATCCCGATACATCTAATCATCG 538
Query 536 ATGAAAACCATCAAAATCTTACTGCAAAATTTAAGAAAAAGAAAATGATGTACATGAAAG 595
||||||||||| |||| || || ||||||| ||||||| |||||||||||||||||||||
Sbjct 539 ATGAAAACCATAAAAACCTAACGGCAAAATATAAGAAAGAGAAAATGATGTACATGAAAG 598
Query 596 TGTTTGAGGGTAGCTGGAAAGTGGAGCCACTATACGCAGATCAGGAACGTTTATGCAAGT 655
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 TGTTTGAGGGTAGATGGAAAGTGGAGCCACTATACGCAGATCAGGAACGCTTATGCAAGT 658
Query 656 CTAGGTCGCGGATTAATGGAGAAGAATACAAAAAATGTAGTGGCGGAAAAGGAAGGATTG 715
|||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||
Sbjct 659 CTAGGTCGCGGATTAATGAAGAAGAGTACAAAAAATGTAGTGACGGAAAAGGAAGGATTG 718
Query 716 GATCAAAAGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAATGTGCCACCGA 775
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GATCAAAGGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTTAATGTGCCACCGA 778
Query 776 TTTCTTGGTTCATCCGTGAGATCACCATAAAAACATTCAAGAATTTGCTCGAAGATCTTA 835
|||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct 779 TTTCTTGGTTCATCCGTGAGATCACCATCAAAACAATAAAGAATTTGCTCGAAGATCTTA 838
Query 836 GACAATTTGTTATCGACATGCACAAAAGTTCAGACTCGGAATGA 879
||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 839 GACAATTTGTTATCGACATGCACAAAAATTCAGACCCGGAATGA 882
> AT1G23660.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8371609-8372845 REVERSE LENGTH=868
Length=868
Score = 424 bits (229), Expect = 1e-117
Identities = 490/611 (80%), Gaps = 37/611 (6%)
Strand=Plus/Plus
Query 238 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGAAAAGaaaaaaaGGTCTTTGC 297
|||||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||
Sbjct 242 AAGCATCCATGGTATGATGCTCCTGCTAAGGTGAAGGTGACAACAAAAAATGGTCTTTGC 301
Query 298 AATATGAACATAGAATTTACATTGGGATGGCCTCCTCAATTAGTCT-CTGAGATGCTT-A 355
|||||||||||||||||| | |||||| |||||| || ||||| | |||||| || |
Sbjct 302 CATATGAACATAGAATTTAAACTGGGATTACCTCCTGAAGGAGTCTAC-GAGATG-TTCA 359
Query 356 CTAATCCAAGA-AACCTAA--ATTTCTTCAGATTATTCGACAGGGAATTTCGCCAACGTT 412
||||||||| | ||| || | | ||||| | | |||| || |||||||||
Sbjct 360 CTAATCCAA-ACAAC-TATCCAGT-CTTCAAAA-AG--GACAAGGCCGGGCGCCAACGTC 413
Query 413 TGGACAACAAATCAACAAAGGTTTTGAAGAAAGACGGACCAAGGCAGATCACGGA-AGTG 471
|||| |||||||||| ||| |||||||||||| | ||||| ||||||| |||||| | ||
Sbjct 414 TGGAAAACAAATCAAGAAAAGTTTTGAAGAAAAATGGACCGAGGCAGACCACGGAGA-TG 472
Query 472 aaaaaa-aCTTT-TAGATATAAGCTTCTCGGGT--TGTCTATAGCTATCCCTATACATCT 527
||||| | ||| || | || |||| | | | || | ||| ||||| ||||||||
Sbjct 473 GAAAAAGA-TTTGTAC-TGGAA-CTTC-CTTTTCATATCCAGAGCAATCCCGATACATCT 528
Query 528 AATCATCGATGAAAACCATCAA-AATCTTACTGCAAAATTTAAGAAAAAGAAAATGATGT 586
| | ||||||||||| ||| || ||||| || ||||||| || || |||||| |||||||
Sbjct 529 AGTTATCGATGAAAATCAT-AAGAATCTCACAGCAAAATATAGGACAAAGAATATGATGT 587
Query 587 ACATGAAAGTGTTTGAGGGTAGCTGGAAAGTGGAGCCA--CTATACGCAGATCAGGAACG 644
|||||||||| ||||||||||||||||||| |||| || | | ||||||||||||
Sbjct 588 TTTTGAAAGTGTTGGAGGGTAGCTGGAAAGTGGTGCCAGACTTT--GTAGATCAGGAACG 645
Query 645 TTTATGCAAGTCTAGGTCGCGGATTAA-TGGAGAAGAATACAAAAAATGTAGTGGCGGAA 703
|| |||||||| |||| || || || | ||||||||||||||| ||||||||| |||
Sbjct 646 CTTGTGCAAGTCAAGGTTGCCGAA-AAGTCGAGAAGAATACAAAAGATGTAGTGGTGGAC 704
Query 704 AAGGAA-GGATTGGATCAAAAGTGACAATGGAGCAGATCTTTCAGCCTTGTTCTCTTCTT 762
|||||| || |||| || || ||||| ||||||||||||||| |||||| | ||||||||
Sbjct 705 AAGGAAAGG-TTGGGTCCAAGGTGACCATGGAGCAGATCTTTAAGCCTTCTCCTCTTCTT 763
Query 763 AATGTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATAAAAAC-ATTCAAGAATT- 820
||| |||||||| |||||||| | ||||||| ||| ||||| ||||| | ||||| ||
Sbjct 764 AATCTGCCACCGGTTTCTTGGATAATCCGTGGGATTACCATCAAAACCAC-CAAGA-TTC 821
Query 821 TGCTCGAAGAT 831
|||||||||||
Sbjct 822 TGCTCGAAGAT 832
> AT1G23610.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G23640.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr1:8362864-8363675 REVERSE LENGTH=667
Length=667
Score = 291 bits (157), Expect = 1e-77
Identities = 254/300 (85%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 570 GAAAAAGAAAATGATGTACATGAAAGTGTTTGAGGGTAGCTGGAAAGTGGAGCCACTATA 629
|||| ||||||||| || |||||||||||||||||||||||||||||| |||||||||||
Sbjct 307 GAAAGAGAAAATGAAGTTCATGAAAGTGTTTGAGGGTAGCTGGAAAGTCGAGCCACTATA 366
Query 630 CGCAGATCAGGAACG-TTTATGCAAGTCTAGGTCGCG-GATTAATGGAGAAGAATACAAA 687
|| |||||||||||| ||| |||| |||||||||| | || || | |||||| ||||||
Sbjct 367 CGTAGATCAGGAACGCTTT-TGCAGGTCTAGGTCG-GTGAATAGTCAAGAAGAGTACAAA 424
Query 688 AAATGTAGTGGCGGAAAAGGAAGGATTGGATCAAAAGTGACAATGGAGCAGATCTTTCAG 747
|||||||| |||||| |||||| |||| ||| | ||||||||||||| |||||| ||
Sbjct 425 AAATGTAGCGGCGGACGAGGAAGAATTGCATCGATGGTGACAATGGAGCTTATCTTTTAG 484
Query 748 CCTTGTTCTCTTCTTAATGTGCCACCGATTTCTTGGTTCATCCGTGAGATCACCATAAAA 807
|||| | | ||||||||| |||||||| |||||||| ||||||||| ||||||||| |||
Sbjct 485 CCTTCTACCCTTCTTAATCTGCCACCGGTTTCTTGGATCATCCGTGGGATCACCATCAAA 544
Query 808 A-CATTCAAGAAT-TTGCTCGAAGATCTTAGACAATTTGTTATCGAC-ATGCACAAAAGT 864
| || ||| ||| ||||| |||||||||||| ||| ||||||| | || |||||||||
Sbjct 545 ATCAC-CAA-AATGTTGCTAGAAGATCTTAGAAAATATGTTATC-ATGATCCACAAAAGT 601
> AT1G23600.1 | Symbols: | Domain of unknown function DUF220 |
chr1:8361004-8362485 REVERSE LENGTH=1134
Length=1134
Score = 233 bits (126), Expect = 2e-60
Identities = 443/589 (75%), Gaps = 49/589 (8%)
Strand=Plus/Plus
Query 238 AAGCATCCATGGTATGATGCTCCTGCTACGGTGAAGGTGA-AAAGaaaaaaaGGTCTTTG 296
|||||||||||||||||| | ||| | | |||||||||| || | ||||| ||||||||
Sbjct 305 AAGCATCCATGGTATGATCCCCCTCCAAAAGTGAAGGTGACAATG-AAAAAGGGTCTTTG 363
Query 297 CAATATGAACATAGAATTTACATTGGGATG-GCCTCCTCAAT-TAGTCTCTGA-GATGC- 352
| |||||||||||||||| ||||| ||| | ||||||| || || | | | || |
Sbjct 364 CCATATGAACATAGAATTGACATTAGGA-GTGCCTCCT-GATGGAG-C-AT-ACGA-ACT 417
Query 353 TTAC-T-AATCCAAGAAACCTA-AATTTCTTCAGATTATTCGACAGGGAATTTCGCCAAC 409
|| | | ||||||| ||| || | ||||| | ||| | |||| | | || ||||
Sbjct 418 TTTCATCAATCCAACCAACATACCA-TTCTT-TG-TTA-TAGACAAGTCAGGGCGACAAC 473
Query 410 GTT-TGGAC-AACAAATCAACAAAGGTTTTGAAGAAAGACGGACCAAGGCAGATCACG-G 466
|| ||| | |||||||||| |||| ||||||||||||| ||||| ||||||| | || |
Sbjct 474 -TTCTGG-CAAACAAATCAAGAAAGATTTTGAAGAAAGATGGACCTAGGCAGA-C-CGTG 529
Query 467 AA-GTGaaaaaaaCTTTTAGATATAAG-CTT-CTCGGGTTGTCTATAGCTATCCCTA-TA 522
|| ||||| ||| | | | | || | ||| || |||| ||| | || |||| | ||
Sbjct 530 AAGGTGAAGAAAGC-TGT-GGCATGGGACTTCCTTTGGTTCTCTGGATCTCTCCCCATTA 587
Query 523 CATCTAATCATCGATGAAAACCATCAAA-ATCTT-ACTGCAAAATTTAAGAAA-AAGAAA 579
|| |||| || | ||||| || ||| | ||| | | ||||| ||||||| || |||
Sbjct 588 -ATTTAATTGTCAACGAAAA-CAAAAAAGACCTTGA-AGTAAAATATAAGAAAGAA-AAA 643
Query 580 ATGATGTACATGAAAGTGTTTGAGGGTAGCTGGAAAGTGGAGCCACTATACGCAGAT-CA 638
||||||| |||||||||||| || |||||||||||| | || |||||||| | |||| ||
Sbjct 644 ATGATGTTCATGAAAGTGTTCGAAGGTAGCTGGAAAATAGAACCACTATATGTAGATGCA 703
Query 639 GGAACGTTTATGCAAG-TCTAGGTCGCGGATTAATGGAGAAGAATACAAAAAATGTAGTG 697
|| || ||||||||| | | | | | | | ||||||||||||||||||||||||
Sbjct 704 -GATCGCTTATGCAAGAAC-ATGAAACCTAAGAGTCGAGAAGAATACAAAAAATGTAGTG 761
Query 698 GCGGAAAAGGAAGGATTGGATCAAAAGTGACAATGGAGCAGATCTTT-CAGCCTTGTTCT 756
||||| |||||| |||| | |||||||||| ||||| || || ||| ||||| | | ||
Sbjct 762 GCGGACAAGGAAAAATTGCACCAAAAGTGACTATGGACCA-ATATTTTCAGCCATATCCT 820
Query 757 CTTCTTAA-TGTGCCACCGATTTCTTGGT-TCATCCGTGAGATCACCAT 803
||| |||| | |||| ||| ||||||||| | || ||| | ||||||||
Sbjct 821 CTT-TTAAATCTGCCGCCGTTTTCTTGGTAT-ATTCGTAACATCACCAT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5