BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900581
Length=171
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33233.1 | Symbols: LCR49 | low-molecular-weight cysteine-ri... 257 2e-68
AT3G48231.1 | Symbols: LCR48 | low-molecular-weight cysteine-ri... 246 4e-65
> AT2G33233.1 | Symbols: LCR49 | low-molecular-weight cysteine-rich
49 | chr2:14083030-14083614 REVERSE LENGTH=393
Length=393
Score = 257 bits (139), Expect = 2e-68
Identities = 162/172 (94%), Gaps = 5/172 (3%)
Strand=Plus/Plus
Query 1 ATGGCATCAGAGATCAAAGCAAGGATCAATGGCGGCCTAGAATGCTTTAATACATGTACG 60
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||
Sbjct 112 ATGGCATCAGAGATCAAAGCAAAGATCAAT---GGACTAGAATGCTTTAATACATGTACG 168
Query 61 CCTTATTATGATGATTATAAATGCAATGTGGACTGTCTATCATCGGGGTACCCGGCAGGA 120
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 169 CCTTATTATGATGATTATAAATGCAATGTGGACTGCCTATCATCGGGCTACCCGGCAGGA 228
Query 121 GATTGTCATG-CTGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAA 171
||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 229 GATTGTCATATC-GTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAA 279
> AT3G48231.1 | Symbols: LCR48 | low-molecular-weight cysteine-rich
48 | chr3:17858259-17858874 REVERSE LENGTH=414
Length=414
Score = 246 bits (133), Expect = 4e-65
Identities = 157/168 (93%), Gaps = 3/168 (2%)
Strand=Plus/Plus
Query 4 GCATCAGAGATCAAAGCAAGGATCAATGGCGGCCTAGAATGCTTTAATACATGTACGCCT 63
||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 130 GCATCAGAGATCAAAGCAAAGATCAAT---GGCCTAGAATGCTTTAATACATGTACATCT 186
Query 64 TATTATGATGATTATAAATGCAATGTGGACTGTCTATCATCGGGGTACCCGGCAGGAGAT 123
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 187 TATTATGATGATCATAAATGCAATGTGGACTGCCTATCATCGGGGTACCCGGCAGGAGAA 246
Query 124 TGTCATGCTGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAA 171
||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 247 TGTTATACTGTGTCTCCTTCTCAACCTAAAAAATGTTGTTGTTATTAA 294
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 7444599948
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5