BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900583

Length=465
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G27520.1 | Symbols:  | F-box and associated interaction doma...   516    8e-146


> AT2G27520.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr2:11762061-11763104 FORWARD LENGTH=1044
Length=1044

 Score =  516 bits (279),  Expect = 8e-146
 Identities = 403/463 (87%), Gaps = 7/463 (2%)
 Strand=Plus/Plus

Query  1    ATGGTGAGGTTTGATCTTCCATGGGATTTGGTAGATGAAATACTCTCTAGAGTTCCGGCT  60
            |||||||| || |||||||||||||||||||||||||||||||||||| || |||| || 
Sbjct  1    ATGGTGAGATTGGATCTTCCATGGGATTTGGTAGATGAAATACTCTCTCGACTTCCCGCA  60

Query  61   ACATCTGTACGACGATTACAATATACTTGCAAACGATGGAACGCTTTATTCAAAGATCCG  120
            |||||| || | ||| ||| || ||| |||||||||||||| ||||||||||||||||||
Sbjct  61   ACATCTCTAGGTCGACTACGATTTACATGCAAACGATGGAATGCTTTATTCAAAGATCCG  120

Query  121  GAATTCATCACAAAGCAATTGGATAAAGCAGTAAAGCA-GAATTTGGTTCTCATGTGGAG  179
            ||||||||||||||||||||  ||||||||| |||||| || |||||||||||||| |||
Sbjct  121  GAATTCATCACAAAGCAATTTCATAAAGCAGCAAAGCAAGA-TTTGGTTCTCATGTTGAG  179

Query  180  TAATTTTAGGGTTTACTCGCTGAGAATCAATCTCAACGAAATTCAAAACGACATTGAAAT  239
            ||||||| ||||||||||| |||| | ||||||||| |||||||  ||| ||||||||||
Sbjct  180  TAATTTTGGGGTTTACTCGATGAGTACCAATCTCAAAGAAATTCCCAACAACATTGAAAT  239

Query  240  ATCACAACTTTTTCACTGCAATGGATTATTGTTATGTTCCACGAAAGAGGCCAACAAGAC  299
            | | ||| ||||||| ||||| || |||||||||||||||||| ||||||  ||||||||
Sbjct  240  AGCGCAAGTTTTTCATTGCAACGGCTTATTGTTATGTTCCACGGAAGAGGGTAACAAGAC  299

Query  300  CAAACTTGTTGTTGTAAATCCGTGTACTGGTCAAACCAGGTGGATCGAACCAAGAAGTGA  359
             ||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| |||
Sbjct  300  TAAACTCGTGGTTGTGAATCCGTGTACTGGTCAGACCAGGTGGATCGAACCAAGAACTGA  359

Query  360  TTACACGAAGCATGAT-ATATATGCTCTAGGTTACGAAAACAATA--AC-AAGAAATCGT  415
            |||||   |  || || ||||  ||||||||||||| |||||| |  || ||||||||||
Sbjct  360  TTACAATTATAATCATGATATC-GCTCTAGGTTACGGAAACAACAGCACCAAGAAATCGT  418

Query  416  ACGATAGCTACAAAATCTTGAGGATTTCGTATGGTGGCAAACT  458
            |||| ||||||||||||||||||||| |||||||| |||||||
Sbjct  419  ACGACAGCTACAAAATCTTGAGGATTACGTATGGTTGCAAACT  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22103024680


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5