BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900623
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT2G28590.1 | Symbols: | Protein kinase superfamily protein | ... 1818 0.0
> AT2G28590.1 | Symbols: | Protein kinase superfamily protein
| chr2:12249679-12251668 FORWARD LENGTH=1609
Length=1609
Score = 1818 bits (984), Expect = 0.0
Identities = 1195/1294 (92%), Gaps = 26/1294 (2%)
Strand=Plus/Plus
Query 1 ATGGGATGTTTCGGACGCACTACGAAATCGAACAAACGATCAGATATCAAAACCACGAAG 60
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 157 ATGGGATGTTTCGGACGCACTCCGAAATCGAACAAACGATCAGATACCAAAACCACGAAG 216
Query 61 AACAACGATTTCACCCCaaaaaaaCTCACCATCAATTCAAACATCGTCCATAAGAACGTA 120
|||||||||||||||||||||||||||||| ||||| | || |||| || | |
Sbjct 217 AACAACGATTTCACCCCAAAAAAACTCACCGTCAATGC-AA-ATCG------AG-A--T- 264
Query 121 AATCTGACACAACCCAGCTCAGATTGTTTAAAAGTTAGTCTATGTGGAGATGTAAGCAAG 180
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 265 AAGCTGACACAACCCAGCTCAGATTGTTTAAAAGTTAGTATATGTGGAGATGTAAGCAAG 324
Query 181 GAGGTAGTTACTAAAG-AGGATCAATTAGCTTTGGATGCTAAGGATACTAATGTTGAAGA 239
||| |||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 325 GAGATAGTTACT-AAGAAGGATCAATTAGCTTTGGATGCTAAAGATACTAATGTTGAAGA 383
Query 240 TGAAGTTATAGGGAAGAAAGCACAGACTTTTACGTTTGAAGAACTCGCTGTTTCGACCGG 299
||||||||||| ||||||||||||||||||||| |||||||||||| ||||||| || ||
Sbjct 384 TGAAGTTATAGTGAAGAAAGCACAGACTTTTACATTTGAAGAACTCTCTGTTTCTACTGG 443
Query 300 AAACTTTAAG-AGTGATTGTTTTCTAGGTGAAGGAGGATTTGGAAAAGTTTACAAAGGTT 358
|||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 444 AAACTTTAAGTCG-GATTGTTTTCTAGGAGAAGGAGGTTTTGGAAAAGTTTACAAAGGTT 502
Query 359 TCATTGAGAAAATCAATCAGGTTGTTGCGATTAAGCAACTTGATAGGAATGGTGCTCAAG 418
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 503 TCATTGAGAAAATCAATCAGGTTGTTGCAATTAAGCAACTTGATCGGAATGGTGCTCAAG 562
Query 419 GAATTAGGGAATTTGTTGTTGAAGTGTTGACGTTAAGTCTCGCTGATCATCCGAATCTTG 478
|||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 563 GAATCAGGGAGTTTGTTGTTGAAGTGTTGACATTAAGTCTCGCTGATCATCCAAATCTCG 622
Query 479 TGAAGCTTATCGGATTTTGTGCTGAGGGTGTTCAGAGACTGTTGGTTTACGAGTATATGC 538
| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCAAGCTTATAGGATTTTGCGCTGAGGGTGTTCAGAGACTGTTGGTTTACGAGTATATGC 682
Query 539 CGCTAGGTTCTTTGGAAAATCACCTCCATGATCTTCC-TCATGGTAGAAAA-CCGCTTGG 596
| ||||| ||| |||| |||||||| ||||||||||| || ||||| |||| |||||||
Sbjct 683 CTCTAGGATCTCTGGATAATCACCTTCATGATCTTCCTTC-TGGTA-AAAACCCGCTTGC 740
Query 597 TTGGAGCACACGGATGAAAATAGCGGCTGGTGCAGCAAGAGGACTAGAGTATCTCCATGA 656
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 741 TTGGAACACTCGAATGAAAATAGCGGCTGGTGCAGCAAGAGGACTAGAGTATCTCCACGA 800
Query 657 TACAATGAAACCTCCTGTGATATACCGCGATCTTAAATGTTCGAATATCTTGCTCGATGA 716
||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 801 TACAATGAAACCTCCTGTGATATACCGTGATCTTAAGTGTTCGAATATCTTGATCGATGA 860
Query 717 AGGATATCACGCAAAACTCTCCGACTTTGGATTAGCTAAAGTCGGACCAAGAGGGAGTGA 776
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 861 AGGATATCACGCAAAACTCTCAGACTTTGGATTAGCTAAAGTAGGACCAAGAGGAAGTGA 920
Query 777 AACCCATGTTTCCACAAGGGTTACGGGAACATATGGTTACTGTGCTCCTGATTACGCGTT 836
||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||| ||
Sbjct 921 AACTCATGTTTCCACAAGAGTTATGGGAACATACGGTTACTGTGCTCCTGATTACGCATT 980
Query 837 AACAGGACAACTCACATTCAAATCAGATGTATACAGTTTCGGAGTTGTTCTTTTGGAGCT 896
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AACTGGACAACTCACATTCAAATCAGATGTATACAGTTTCGGAGTTGTTCTTTTGGAGCT 1040
Query 897 TATCACTGGAAGTAAAGCTTTCGATAACACGAGAACACGTAATCACCAGAGTCTAGTTGA 956
||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1041 TATTACTGGAAGGAAAGCTTACGATAACACGAGAACACGTAATCACCAGAGTCTTGTTGA 1100
Query 957 ATGGGCACGTCCGTTGTTTAAAGATAGGAAGAATTTCAAGAAAATGGTTGATCCGTTACT 1016
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 ATGGGCAAATCCCTTGTTTAAAGATAGGAAGAATTTCAAGAAAATGGTTGATCCGTTACT 1160
Query 1017 CGAAGGAGATTACCCGGTTAGAGCATTGTATCAAGCGCTTGCAATAGCTGCAATGTGTGT 1076
|||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1161 CGAAGGAGATTATCCGGTTAGAGGATTGTATCAAGCACTTGCAATAGCTGCAATGTGTGT 1220
Query 1077 TCAAGAACAGCCAAGTATGAGACCGGTGATAGCCGATGTAGTAATGGCTCTGGATCACTT 1136
|||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1221 TCAAGAACAGCCTAGTATGAGACCGGTGATAGCTGATGTAGTAATGGCTTTGGATCACTT 1280
Query 1137 AGCTTCTTCCAAATATGATCATAGTCACCGTCAAAAGCAGCCTAATGTGACAGAGACTAA 1196
||||||||| |||||||||| ||||||||||||||||||| ||||||||| ||||||||
Sbjct 1281 AGCTTCTTCTAAATATGATCGTAGTCACCGTCAAAAGCAGGATAATGTGACCGAGACTAA 1340
Query 1197 AGTCGAGGAAGAGAAAACACTTGT-A--GAATCTAATGTTTGTGTCGAGGAGAAACAAGA 1253
|||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 1341 AGTCGATGAAGAGAAAACACTTACCACAGAATCTAATGTTTGTGTGGAGGAGAAACAAGA 1400
Query 1254 AGAGATCAAGGTTTGCTCAGATCAAGCGACTTAA 1287
|| ||||| | |||||||||||||| ||||||
Sbjct 1401 -GA--TCAAGATATGCTCAGATCAAGCAACTTAA 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5