BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900635
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat pro... 183 1e-45
AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:143... 178 5e-44
> AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat protein
| chr3:9244325-9250768 FORWARD LENGTH=6444
Length=6444
Score = 183 bits (99), Expect = 1e-45
Identities = 125/137 (91%), Gaps = 3/137 (2%)
Strand=Plus/Plus
Query 383 GTTCACATGTAGCATTACAAACAACTTCGAAAGTGACCGGTAAAGGAGGGTTTGGTAAGA 442
|||||||||||||||||||||||| ||| ||||||| ||||||| || || |||||||||
Sbjct 5282 GTTCACATGTAGCATTACAAACAATTTCAAAAGTGATCGGTAAA-GAAGG-TTGGTAAGA 5339
Query 443 ACAGCAAAAACATTAGAAATCGAAATCAGATAAGTTTAGACATTGTTTTATGGTTGCTAA 502
||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |||
Sbjct 5340 ACAGCAAAAACATTAGAAACCGAAATCAGATAAGTTTATACATTATTTTATGGTTGATAA 5399
Query 503 AGTGTAAAAGTT-TGCA 518
||||||||| || ||||
Sbjct 5400 AGTGTAAAATTTCTGCA 5416
Score = 161 bits (87), Expect = 5e-39
Identities = 105/114 (92%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 193 CACGCCATAGAAAGCATAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCT 252
||| ||||||||||||||||| ||||||||||||| || ||||||||||||||| |||||
Sbjct 3682 CACACCATAGAAAGCATAAAACCAACGTATAAAGTCAAAAAGGTTTGGACTGGTGATCCT 3741
Query 253 TGCTCTCCAAGACTATTCCCTTGGGAAGGTACTTCTAATTACCAAATCAAGTCC 306
|||||||||||||||||||||||| |||||||||| ||||||||||| || |||
Sbjct 3742 TGCTCTCCAAGACTATTCCCTTGGAAAGGTACTTCAAATTACCAAATAAAATCC 3795
Score = 106 bits (57), Expect = 2e-22
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 307 ATGAGTCTTAGTACAAGTTGGTTACAAGGACCAATAGCCGTCTCATTTAGAAATCTCTCC 366
||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||| |||
Sbjct 3862 ATGAG-CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGACATCTTTCC 3920
Query 367 CTTCTTGAGTCAC 379
|||||||||||||
Sbjct 3921 CTTCTTGAGTCAC 3933
> AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:14385593-14389689
FORWARD LENGTH=2945
Length=2945
Score = 178 bits (96), Expect = 5e-44
Identities = 203/250 (81%), Gaps = 25/250 (10%)
Strand=Plus/Plus
Query 152 CAGCACAATCTCTAAATGAATTTTCCACCACCA-T--CAAAGACCACGCCATAGAAAGCA 208
||||||||||||| ||||||||| ||||| | | | | | || |||||||||||||
Sbjct 1111 CAGCACAATCTCTGGATGAATTTTACACCAGAATTGACGATGTTCAAGCCATAGAAAGCA 1170
Query 209 TAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCTTGCTCTCCAAGACTAT 268
|||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| |
Sbjct 1171 TAAAATCAACGTATAAAGTGAATAAGATTTGGACTGGTGATCCTTGCTCTCCCAGACTCT 1230
Query 269 TCCCTTGGGAAGGTACT---T-C---TA-A----TT--AC----CAAATCAAGTCCATGA 310
||||||||||||||| | | | || | || | |||||||||||| | |
Sbjct 1231 TCCCTTGGGAAGGTATTGGATGCAGCTACAACACTTCTAGTTATCAAATCAAGTCCCTAA 1290
Query 311 GTCTTAGTACAAGTTGG-TTACAAGGACCAATAGCCGT-CTCATTTAGAAATCTCTCCCT 368
||||||| ||||| || ||||| ||||||||||| || | |||||||||||||||||||
Sbjct 1291 ATCTTAGTTCAAGT-GGATTACATGGACCAATAGC-GTTCGCATTTAGAAATCTCTCCCT 1348
Query 369 TCTTGAGTCA 378
||||||||||
Sbjct 1349 TCTTGAGTCA 1358
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5