BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg900635 Length=519 Score E Sequences producing significant alignments: (Bits) Value AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat pro... 183 1e-45 AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:143... 178 5e-44 > AT3G25495.1 | Symbols: | pseudogene of leucine-rich repeat protein | chr3:9244325-9250768 FORWARD LENGTH=6444 Length=6444 Score = 183 bits (99), Expect = 1e-45 Identities = 125/137 (91%), Gaps = 3/137 (2%) Strand=Plus/Plus Query 383 GTTCACATGTAGCATTACAAACAACTTCGAAAGTGACCGGTAAAGGAGGGTTTGGTAAGA 442 |||||||||||||||||||||||| ||| ||||||| ||||||| || || ||||||||| Sbjct 5282 GTTCACATGTAGCATTACAAACAATTTCAAAAGTGATCGGTAAA-GAAGG-TTGGTAAGA 5339 Query 443 ACAGCAAAAACATTAGAAATCGAAATCAGATAAGTTTAGACATTGTTTTATGGTTGCTAA 502 ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||| Sbjct 5340 ACAGCAAAAACATTAGAAACCGAAATCAGATAAGTTTATACATTATTTTATGGTTGATAA 5399 Query 503 AGTGTAAAAGTT-TGCA 518 ||||||||| || |||| Sbjct 5400 AGTGTAAAATTTCTGCA 5416 Score = 161 bits (87), Expect = 5e-39 Identities = 105/114 (92%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 193 CACGCCATAGAAAGCATAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCT 252 ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||| ||||| Sbjct 3682 CACACCATAGAAAGCATAAAACCAACGTATAAAGTCAAAAAGGTTTGGACTGGTGATCCT 3741 Query 253 TGCTCTCCAAGACTATTCCCTTGGGAAGGTACTTCTAATTACCAAATCAAGTCC 306 |||||||||||||||||||||||| |||||||||| ||||||||||| || ||| Sbjct 3742 TGCTCTCCAAGACTATTCCCTTGGAAAGGTACTTCAAATTACCAAATAAAATCC 3795 Score = 106 bits (57), Expect = 2e-22 Identities = 68/73 (93%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 307 ATGAGTCTTAGTACAAGTTGGTTACAAGGACCAATAGCCGTCTCATTTAGAAATCTCTCC 366 ||||| |||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| Sbjct 3862 ATGAG-CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGACATCTTTCC 3920 Query 367 CTTCTTGAGTCAC 379 ||||||||||||| Sbjct 3921 CTTCTTGAGTCAC 3933 > AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:14385593-14389689 FORWARD LENGTH=2945 Length=2945 Score = 178 bits (96), Expect = 5e-44 Identities = 203/250 (81%), Gaps = 25/250 (10%) Strand=Plus/Plus Query 152 CAGCACAATCTCTAAATGAATTTTCCACCACCA-T--CAAAGACCACGCCATAGAAAGCA 208 ||||||||||||| ||||||||| ||||| | | | | | || ||||||||||||| Sbjct 1111 CAGCACAATCTCTGGATGAATTTTACACCAGAATTGACGATGTTCAAGCCATAGAAAGCA 1170 Query 209 TAAAATCAACGTATAAAGTGAATAAGGTTTGGACTGGTAATCCTTGCTCTCCAAGACTAT 268 |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| | Sbjct 1171 TAAAATCAACGTATAAAGTGAATAAGATTTGGACTGGTGATCCTTGCTCTCCCAGACTCT 1230 Query 269 TCCCTTGGGAAGGTACT---T-C---TA-A----TT--AC----CAAATCAAGTCCATGA 310 ||||||||||||||| | | | || | || | |||||||||||| | | Sbjct 1231 TCCCTTGGGAAGGTATTGGATGCAGCTACAACACTTCTAGTTATCAAATCAAGTCCCTAA 1290 Query 311 GTCTTAGTACAAGTTGG-TTACAAGGACCAATAGCCGT-CTCATTTAGAAATCTCTCCCT 368 ||||||| ||||| || ||||| ||||||||||| || | ||||||||||||||||||| Sbjct 1291 ATCTTAGTTCAAGT-GGATTACATGGACCAATAGC-GTTCGCATTTAGAAATCTCTCCCT 1348 Query 369 TCTTGAGTCA 378 |||||||||| Sbjct 1349 TCTTGAGTCA 1358 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24815668618 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5